Pairwise Alignments

Query, 287 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein BetX from Pseudomonas putida KT2440

Subject, 344 a.a., histidine-binding periplasmic signal peptide protein from Sinorhizobium meliloti 1021

 Score = 53.1 bits (126), Expect = 8e-12
 Identities = 73/325 (22%), Positives = 119/325 (36%), Gaps = 55/325 (16%)

Query: 11  FLGVGTALVMAMSAAQAM----AKEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKLQA 66
           F   G  L  + S A A      K V+   +D W      T V   ++ +  GYD ++ +
Sbjct: 10  FAAAGLMLAASASGANASYCGDGKTVTFAGID-WESGAFITEVMKTILSK--GYDCQVDS 66

Query: 67  VATGIMWQGVATGKLDAMLSAWLPVTHGEYWAK--NKDNVVDYGPNFKDAKIGLIVPEYV 124
           +    +    AT   D  + A   +   + W K   +  V+  G  F  A  G  VP+YV
Sbjct: 67  IPGNSVTLEQATANNDVQIFAEEWLGRSDVWNKAVEEKKVIAVGKTFVGASEGWFVPDYV 126

Query: 125 ----------------KAVS------IADLKTD--NSFKDRIVGIDAG---SGVMLKTDQ 157
                           K+VS      IA++  D     K R +   +G    GV     +
Sbjct: 127 VHGDPARNIEAKAPDLKSVSQLTDPKIAEIFADPEEPSKGRFLNCPSGWTCEGVSTAKLE 186

Query: 158 AIKDYGLTSYKLQASSGAAMTAELGRAYAKQQSIAVTGWVPHWMFAKWKLKFLEDPKGVY 217
           A K  G T    +  +G A+ A +  AY + + I    W P  +  K+KL  LE+P    
Sbjct: 187 AYK-LGETYVNFRPGTGTALDAAITSAYLQGEPILFYYWSPTAILGKFKLIQLEEPAYNE 245

Query: 218 GAAETVNSIGSKE------------------LATKAPEVAEFLKKFNWQSKDEIGEVMLA 259
              + ++S   K                    A++APE+ E L+K  +   +    +   
Sbjct: 246 ACWKELSSANGKRDEGCAFPSVDVAYGVNSTFASEAPEIVEILEKATFPLDEVNASLAYM 305

Query: 260 IQEGAKPEAAAKDWVAKHPDRVKEW 284
                   AAA +++    D   +W
Sbjct: 306 ADNKVDATAAAAEFLKTKGDIWSKW 330