Pairwise Alignments

Query, 211 a.a., 23S rRNA (746) and tRNA (32) pseudouridine synthase from Pseudomonas putida KT2440

Subject, 559 a.a., RluA family pseudouridine synthase from Vibrio cholerae E7946 ATCC 55056

 Score =  135 bits (341), Expect = 1e-36
 Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 12/212 (5%)

Query: 5   NVQILFEDAAILVINKPTLLLSVPGRAEDNKDCLITRL--QENGYPDALIVHRLDWETSG 62
           ++ I+++D AI+V+NKP   LSVPG      D ++TRL  Q         +HRLD  TSG
Sbjct: 355 DITIVYQDDAIVVVNKPAEFLSVPG--VHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSG 412

Query: 63  IILLARDADSHRELSRQFHDRETEKAYTALCWGQPALDSGSIDLPLRYDPPTKPRHVVDH 122
           +++ A    ++++L +QF  R  +K Y AL  G+ +   G I LPL  D   +PR  V  
Sbjct: 413 LLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCW 472

Query: 123 EQGKHALTFWRIVERCGDHCRVELTPITGRSHQLRVHM---LSIGHPLLGDRLYANPQAL 179
           +QGK ALT W  V+   +  RV L P TGR+HQLRVH    L +  P++GD LY      
Sbjct: 473 QQGKPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYG----- 527

Query: 180 AAHERLCLHASMLSFTHPVSGQRLKFECPAPF 211
              +RL LHA  LSF HP + Q + F+  A F
Sbjct: 528 LQDKRLFLHAEQLSFAHPYTKQPMTFQVDADF 559