Pairwise Alignments

Query, 717 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 354 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 86.3 bits (212), Expect = 2e-21
 Identities = 61/228 (26%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 482 ANARAQTMMPLIRNVMFVVIFIIAVIVALANMGMNVTPLLAGAGVIGLAIGFGAQSLVAD 541
           +N +A  MMP+I+  + V++++I +++AL+N+G+N++ LL   G+ G+A    AQ  V +
Sbjct: 120 SNGQANKMMPIIKRTILVIVWLIGIVMALSNVGVNISALLGTLGIGGIAFALAAQDTVKN 179

Query: 542 LITGLFIIIEDSLAIDDYVDVGGHLGTVEGLTIRTVRLRDIDGIVHTIPFSEI--KSIKN 599
           +     I+ +   +I D + V  + GTV  + +R+ ++ + D  + T P  +I   SI N
Sbjct: 180 VFGAFTILTDKPFSIGDTIRVDSYEGTVVDVGVRSTKIMNYDKRIITFPNYKITDTSIVN 239

Query: 600 YSREFGYAIFRVAIPHSMNIDQAISLVREVGQKLRNDPLMRRNIWS-PLELQGV--ESFE 656
            S E    + RV +   +  D     ++E  + L++ P    N+ S P ++  V  E  +
Sbjct: 240 ISSE---PMRRVVLNLGLTYDTTSEKMKEALELLKSIPKRVENVSSNPSDIVAVFTEYSD 296

Query: 657 SGSAILRARFKTAPIKQWEVSRAFNLALKRQLDEAGLDLATPRLSVQV 704
           S   I+   F         V+   N+ +    ++AGL+LA P  +V +
Sbjct: 297 SALVIMYIYFIEKQGDILGVTSNMNMEILAAFNKAGLNLAFPTRTVYI 344



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 180 VRFALRKLGPWLVALVFTVYLSFVLPPSLGKSLAMVLAYALVVGTCFSAICVIAFSLLDG 239
           V+FA+  LG W+         SFV       S+ +VL      G  FS++  + +     
Sbjct: 62  VKFAIILLGIWIAIHRLVYPDSFVKVVDNAYSILIVLDITWFFGRLFSSLLQVYWGKQSN 121

Query: 240 PHRHRALHILRRQAFRPLWLIGSFAAFGE-AMSDPRMLVALGT-HLAHTLA---TLANVI 294
              ++ + I++R     +WLIG   A     ++   +L  LG   +A  LA   T+ NV 
Sbjct: 122 GQANKMMPIIKRTILVIVWLIGIVMALSNVGVNISALLGTLGIGGIAFALAAQDTVKNVF 181

Query: 295 AA 296
            A
Sbjct: 182 GA 183