Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 450 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pseudomonas stutzeri RCH2

 Score =  622 bits (1603), Expect = 0.0
 Identities = 310/448 (69%), Positives = 359/448 (80%)

Query: 5   KSNSGLRFQPAGGNRTPQVPVGKKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEA 64
           K +  LRFQP+GG R PQVP+GKKQRL+IERLA DGRGIAF++GRTWFV GAL GE VEA
Sbjct: 3   KRSGALRFQPSGGERKPQVPIGKKQRLNIERLANDGRGIAFVEGRTWFVEGALPGEEVEA 62

Query: 65  RVLNARGKVVEARLERLLQAAPERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQL 124
           RVL+AR +VVEAR ER+LQA+ +R+  PC +   CGGCNLQH P   QLALKQ TLAEQL
Sbjct: 63  RVLSARSQVVEARCERVLQASAQRQVEPCPHARLCGGCNLQHAPIADQLALKQHTLAEQL 122

Query: 125 QRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVL 184
            RVA +QPEAWA PL GP FGYRRRAR+AVRWDVK++ L++GFRA +SQ+I++I +C VL
Sbjct: 123 ARVADLQPEAWAEPLVGPAFGYRRRARLAVRWDVKSKHLDIGFRASSSQEIVSIRECPVL 182

Query: 185 VQPLQSILRHLPTVLRSLSKPQALGHVELFSGTAEAVLVRHVAPLPAEDQARLQAFCEQA 244
           VQPLQ++L  L T LR LSKPQA+GHVELFSGTAEAVL+RH A LP  D ARL++F    
Sbjct: 183 VQPLQTLLPGLLTALRDLSKPQAIGHVELFSGTAEAVLIRHTAALPESDLARLRSFATAH 242

Query: 245 NAQLWLQGEGEPAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAP 304
            AQLW QGEGEP P D AA LG+ L  W LELAWRPGDFVQVNA VN AM+ QAL WL  
Sbjct: 243 RAQLWWQGEGEPQPDDCAASLGYRLDAWDLELAWRPGDFVQVNAPVNDAMVAQALEWLDA 302

Query: 305 QADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLS 364
             DE VLDLFCGLGNF+LPLAR    VV VEGV+AMV RA  NA+ N + +A F++ADLS
Sbjct: 303 GKDEAVLDLFCGLGNFSLPLARSGARVVGVEGVEAMVARAQENAQRNALEHAHFYRADLS 362

Query: 365 QPLAGTGWAAEGFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQ 424
           +PLA   WA  GF+AVLLDPPRDGA E+V+ ++ LKA+R+VYVSCNPATLARDA+ L  Q
Sbjct: 363 KPLADAPWAGSGFAAVLLDPPRDGALEIVRQMSMLKAQRVVYVSCNPATLARDARELASQ 422

Query: 425 GYRLKRAGILDMFPQTAHVEAMALFEAG 452
           GYRLKRAG+LDMFPQTAHVEAMALFE G
Sbjct: 423 GYRLKRAGVLDMFPQTAHVEAMALFERG 450