Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (248), Expect = 1e-25
 Identities = 101/391 (25%), Positives = 158/391 (40%), Gaps = 57/391 (14%)

Query: 93  CRYY--DRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRA 150
           C ++   RC  C+L   P+  Q+  K + L E +     VQ   W  P++  +  +R +A
Sbjct: 3   CEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQ---WLPPVTSADTAFRNKA 59

Query: 151 RVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLR--------SL 202
           ++ V     A  L +    +A    +++  C +  QP+Q +L +L   +R         L
Sbjct: 60  KMVVLGAAHAPILGI---EDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKL 116

Query: 203 SKPQALGHVEL------------FSGTAEAVLVRHVAPLPAEDQARLQAFCEQANAQ--- 247
            K   L  + L            F   + AVL R    LP    A         N Q   
Sbjct: 117 KKKGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVH 176

Query: 248 -LWLQGEGEPAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQA 306
              L+GE E    +  + L        + +  RP  F Q N +V   +   A  W+   A
Sbjct: 177 MARLEGEEEIFLTETQSLLEHFN---DVPMVIRPKSFFQTNPKVAEQLYATARTWVREIA 233

Query: 307 DERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHN--------ARF 358
             ++ DLFCG+G FAL  A     V  +E     +  A  +A+   + N        A+F
Sbjct: 234 PTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKF 293

Query: 359 FQADLSQPLAGTGWAAEGFSAVLLDPPRDG-AFEVVQGIARLKARRLVYVSCNPATLARD 417
            Q+ +S P             VL++PPR G   E+   +  L  + ++Y SCNP T+ +D
Sbjct: 294 SQSQMSAP-----------ELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKD 342

Query: 418 AQVLVGQGYRLKRAGILDMFPQTAHVEAMAL 448
              L    Y++ R    DMFP T H E + L
Sbjct: 343 IAEL--SSYQMIRVQWFDMFPHTDHAEVLTL 371