Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 369 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Vibrio cholerae E7946 ATCC 55056

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 25/186 (13%)

Query: 283 FVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVD 342
           F Q NA+V   M+E A+     ++   +L+L+CG GNF+L LA+    V+A E  +  V+
Sbjct: 188 FTQPNAKVAEKMLEWAVD-CTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVE 246

Query: 343 RAAANARNNNVHNA---RFFQADLSQPL-----------AGTGWAAEGFSAVLLDPPRDG 388
            A  N   N + N    R    + +Q +           AG    +   + + +DPPR G
Sbjct: 247 AAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSG 306

Query: 389 ----AFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVE 444
                 ++VQG       R++Y+SCNP TL  + QVL G+ +++ R  + D FP T H+E
Sbjct: 307 MDIDTCKMVQGY-----ERILYISCNPETLQENLQVL-GETHQVVRFALFDQFPYTHHME 360

Query: 445 AMALFE 450
           A  + E
Sbjct: 361 AGVMLE 366