Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 463 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Synechocystis sp000284455 PCC 6803

 Score =  155 bits (393), Expect = 2e-42
 Identities = 132/458 (28%), Positives = 203/458 (44%), Gaps = 45/458 (9%)

Query: 26  GKKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAA 85
           G    L I  L   G GI   + R  FV     G+ +E R++  +     A+L ++L+ +
Sbjct: 16  GSVVELTITGLNHQGEGIGRFNERVVFVPDTAPGDRLEVRLVKVKRNYALAQLLKILEPS 75

Query: 86  PERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGP-EF 144
            +R    C   D+CGGC  QHL ++ Q+  KQ+ + + L+R+ G         L  P   
Sbjct: 76  VQRTRPSCIVADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASL 135

Query: 145 GYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLP-------- 196
           GYR +A   +    K  Q++ G+  + S  ++ I+ C V    L  +L  +         
Sbjct: 136 GYRNKATYPLSRS-KTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGW 194

Query: 197 TVLRSLSKPQALGHVELFSG--TAEAVLV---RHVAPLPAEDQAR--LQAFCEQANAQLW 249
           ++     K   L H+ L  G  T E +L     H      E+QA   L+ + +     L 
Sbjct: 195 SIYDEEKKQGKLRHLSLRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLN 254

Query: 250 LQGE------GEPAPV--------DPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMI 295
           +Q E      G+   V        +  A L F+L             F QVN+     ++
Sbjct: 255 IQPEPNNRIFGDETVVIAGRGICREKFADLSFSLGA---------NTFFQVNSGAAELLL 305

Query: 296 EQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHN 355
            +    L  Q  E ++D + G+G F LPLARQ R+ +A+E  Q  V +   NA  N + N
Sbjct: 306 TRLQQALNLQGAELLVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIAN 365

Query: 356 ARFFQADLSQPLAGTGWAAEGFSAVLLDPPRDG-AFEVVQGIARLKARRLVYVSCNPATL 414
             F    +   L      +E    +LLDPPR G A EV++ I R +  ++ Y+SC P TL
Sbjct: 366 VDFLAGTVETVLP---TLSEIPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTL 422

Query: 415 ARDAQVLVGQG-YRLKRAGILDMFPQTAHVEAMALFEA 451
           ARD + L  +G Y +      D FPQTAHVE   + +A
Sbjct: 423 ARDLKFLCAEGFYGITWVQGCDFFPQTAHVECAVILKA 460