Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 455 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Synechococcus elongatus PCC 7942

 Score =  172 bits (437), Expect = 2e-47
 Identities = 135/464 (29%), Positives = 207/464 (44%), Gaps = 62/464 (13%)

Query: 26  GKKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAA 85
           G +  L IE L   G G+  ++GR  FV   + G+ ++A++L  R +   A LE +L+A+
Sbjct: 12  GDRLSLTIESLCDSGDGLGRVEGRVVFVPDTVPGDRIQAKLLQVRSRYARAELEEVLEAS 71

Query: 86  PERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFG 145
           P+R    C   D+CGGC  Q + + AQ+  K   + + +QR+  ++ E      +    G
Sbjct: 72  PDRIRPACIVADKCGGCQWQTVDYPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLG 131

Query: 146 YRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKP 205
           YR +    +R   +  +++ G+  + S  +I ++ C V    L  +L  +   + +   P
Sbjct: 132 YRNKVSYPLRRSDRG-EVQAGYFRKGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWP 190

Query: 206 --------QALGHVELFSGTAEAVLVRHVAPLPAEDQARLQAFCEQANAQLWLQG----- 252
                   + L H+ L  G     ++  +  +  +DQ        +A A+ WL       
Sbjct: 191 IYDEQTRSRGLRHLGLRIGQRTGEIL--ITLIATDDQLPEV----EAQAEQWLTDYPNVV 244

Query: 253 ----------------------EGEPAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQV 290
                                  G P  ++    L FA+ P             +   QV
Sbjct: 245 GVCLNLNPSHGNRILGDETHCLAGRPYLIECLDDLEFAIGP-------------ETFFQV 291

Query: 291 NTAMIEQALAWLAP--QADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANA 348
           NT   E+ L  L    +  +R+ DL+CG+G   LPLA +   V+ +E +   V +A  NA
Sbjct: 292 NTEQAERLLPILKDFLRGSDRLFDLYCGVGTLTLPLASEVGSVLGLEILPESVVQAQQNA 351

Query: 349 RNNNVHNARFFQADLSQPLAGTGWAAEGFSAVLLDPPRDGAFEVVQGIAR-LKARRLVYV 407
             N + N  F    +   LA      E   AVLLDPPR G    V  + R  + +R+ YV
Sbjct: 352 DRNGISNVEFRAGAVEILLA---QIPESPDAVLLDPPRKGCEPAVIEVLRDRQPQRIAYV 408

Query: 408 SCNPATLARDAQVL-VGQGYRLKRAGILDMFPQTAHVEAMALFE 450
           SCNPATLARD Q L  G  YRL     LD FPQTAHVE +AL E
Sbjct: 409 SCNPATLARDLQALCAGDRYRLLLVQPLDFFPQTAHVETVALLE 452