Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 415 a.a., RNA methyltransferase from Sinorhizobium meliloti 1021

 Score =  157 bits (397), Expect = 6e-43
 Identities = 141/435 (32%), Positives = 199/435 (45%), Gaps = 45/435 (10%)

Query: 33  IERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAPERREAP 92
           I+RL   G G+A  +    F    L GE V   V  A G ++      L +A+PER E P
Sbjct: 8   IDRLGAQGDGVARTEAGPVFAPFTLPGETVSLAVNKANGTLIS-----LKEASPERVEPP 62

Query: 93  CRYYD------RCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGY 146
           CR++        CGGC LQH       A K+  + + L R  G+ PE  A  ++ P  G 
Sbjct: 63  CRHFGPDGVNGTCGGCTLQHASDALYHAFKRNLVIDAL-RSKGLTPEVGALIIARP--GD 119

Query: 147 RRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSIL---RHLPTVLRSLS 203
           RRRA    R   K  +L +G+    S  I++I +C +    + S L   R +   + S +
Sbjct: 120 RRRAAFTARRTEK--ELLLGYNQMQSHHIVSIGECPITSPGIVSRLATIRKIAAAMASSA 177

Query: 204 KPQALGHVELFSGTAEAVLVRHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPAPVDPAA 263
           +P  +  +E  +G   A     ++  P    A      E+  A++ L GE    P+ PA 
Sbjct: 178 EPFRITVLETDTGLDLAFEGLKLSD-PQRRSAVDAVLGERGIARVSLNGEIVVEPLKPAI 236

Query: 264 QL-GFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFAL 322
              G  ++P        PG F Q       AM +  LA +     +RV DLF G+G FAL
Sbjct: 237 DFDGVTVSP-------PPGAFTQATRPAEDAMAKLVLAHVGKA--KRVADLFAGIGTFAL 287

Query: 323 PLARQAREVVAVEGVQAMV---DRAAANARNNNVHNAR----FFQADLSQPLAGTGWAAE 375
            +AR AR V AVEG    V   D AA N +      A     F +  ++Q L       +
Sbjct: 288 RIARTAR-VHAVEGDDRAVKALDFAARNTQGLKPVTAEKRDLFRRPMMAQEL-------K 339

Query: 376 GFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILD 435
            F AV+ DPPR GA      +AR   +++  VSCNP TLARD  +L   GYR+     +D
Sbjct: 340 AFDAVVFDPPRAGAETQCHELARSGVKKIAAVSCNPVTLARDLSILTAAGYRITGVTPID 399

Query: 436 MFPQTAHVEAMALFE 450
            F  +AHVE +A  E
Sbjct: 400 QFLWSAHVETVATLE 414