Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 362 a.a., tRNA (uracil-5-)-methyltransferase from Dechlorosoma suillum PS

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 93/352 (26%), Positives = 143/352 (40%), Gaps = 39/352 (11%)

Query: 120 LAEQLQRVAGVQPEAWAAPLSGPEFGYRRRA----RVAVRWDVKARQLEVG---FRAEAS 172
           LAE+L R       A  AP   PE    R A    R+   + +  R+ +V    F  +  
Sbjct: 15  LAEKLARY-----RADFAPFDLPEPHIARSAPLHYRLRAEFQIVRREGQVAYAMFNPDNP 69

Query: 173 QDIIAIDDCAVLVQPLQSILRHLPTVLRSLSK-PQALGHVELFSGTAEAVLVRHVAPLPA 231
           ++ + ++   V    +  ++  L   L++       L  V+  S  +  +LV  V   P 
Sbjct: 70  REAVPLETFPVASATICEMMPRLRDELQASELLKDYLFRVDFLSTLSGELLVTLVYKRPL 129

Query: 232 ED--QARLQAFCEQANAQLWLQGEGEPAPVDPA-AQLGFALAPWQLELAWRPGDFVQVNA 288
               +A  +   ++ N QL  +  G+   +     +  F L   QL      G F Q N 
Sbjct: 130 RPLWEAAARDLAQRLNIQLIGRSRGQKLVLGRDWVEESFELEGRQLRYQQIEGAFSQPNG 189

Query: 289 QVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANA 348
           +VN  M+  A A  A    + +L+L+CG GNF + LA     V+A E  +  V  A  N 
Sbjct: 190 EVNRQMLAWACAQAATLGGD-LLELYCGNGNFTIALAPHYERVLATEMSKTSVHAAQYNL 248

Query: 349 RNNNVHNARFFQADLSQ------------PLAGTGWAAEGFSAVLLDPPR----DGAFEV 392
             N V N +  +    +             LAG       FS V +DPPR    DG   +
Sbjct: 249 EANRVDNVKVVRISAEEFSEAYSGTKEFTRLAGIDLKGYRFSTVFVDPPRAGLDDGTLAL 308

Query: 393 VQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVE 444
           V+G        ++Y+SCNP TL  +   L    +R+  A   D FP T H+E
Sbjct: 309 VRGF-----DHILYISCNPETLKANVAAL-HDTHRIAAAAAFDQFPYTDHLE 354