Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

 Score =  282 bits (722), Expect = 1e-80
 Identities = 174/436 (39%), Positives = 247/436 (56%), Gaps = 15/436 (3%)

Query: 23  VPVGKKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLL 82
           +PVGK     IE L  D RG+  L+G+T FV GAL GE VE  +   +       +  +L
Sbjct: 1   MPVGK-----IESLDHDARGVTRLEGKTVFVEGALPGETVEYALFREKPNYAVGEVSAVL 55

Query: 83  QAAPERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGP 142
           + +  R    C ++  CGGC++QHL   AQ+A KQR L   L  +A ++PE    P+ GP
Sbjct: 56  RPSCARVPPRCPHFGTCGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGP 115

Query: 143 EFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSL 202
            +GYR RAR+ VR  V+++ + VGF  + S  +  +  C +L   +  +L  L  +   L
Sbjct: 116 TWGYRHRARLTVRM-VESKGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRL 174

Query: 203 SKPQALGHVELFSGTAEAVLV-RHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPA---- 257
           S    L  VE+  G    V+V R + PL   D+  L+AF ++     +LQ +G  +    
Sbjct: 175 SIRDRLPQVEIAVGEKCTVMVLRILEPLSGADEKLLRAFADEHGIVFFLQPKGPASAYRF 234

Query: 258 -PVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCG 316
            PVD    L + L  + LE+ + P +F QVN  +N  +I +A+  L PQ  ER+ DLFCG
Sbjct: 235 HPVD-GPDLSYLLPEFGLEMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADLFCG 293

Query: 317 LGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNV-HNARFFQADLSQPLAGTGWAAE 375
           LGNF LP+AR    VV VEG++ +  RA  NA  N +  N  F  A+L +    +  A  
Sbjct: 294 LGNFTLPIARSGARVVGVEGLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALG 353

Query: 376 GFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQ-GYRLKRAGIL 434
            F  +L+DPPR+GA EVV+ +      R+VYVSCNP+TLARDA +LV Q GYR   AGI+
Sbjct: 354 HFDKMLIDPPREGAVEVVKALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIV 413

Query: 435 DMFPQTAHVEAMALFE 450
           +MFP T+HVE++ALFE
Sbjct: 414 NMFPHTSHVESIALFE 429