Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 382 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 98/384 (25%), Positives = 164/384 (42%), Gaps = 38/384 (9%)

Query: 93  CRYYDR--CGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRA 150
           C Y++R  C  C    LP   QLA K + L + L          +  P+ G + G+R +A
Sbjct: 3   CGYFERGQCQSCRHIKLPMVQQLAAKTQELQQLLAPFVVSTNTQFLPPVVGEDSGFRNKA 62

Query: 151 RVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKP----- 205
           ++ V     A  L +      + + +++ DC +    +Q++L  L   ++    P     
Sbjct: 63  KMVVLGAAHAPVLGI---VSPNGEAVSLCDCLLYPADMQALLYRLERFVQQAGIPPYRID 119

Query: 206 QALGHVE------------------LFSGTAEAVLVRHVAPLPAE-DQARLQAFCEQANA 246
           +A G ++                  L S  A A + R +  L AE  Q  + +   Q   
Sbjct: 120 KAKGELKYILLTRSQVRGEYMLRFVLRSPDAIARIERELPALMAEYPQINVVSVNIQPIH 179

Query: 247 QLWLQGEGEPAPVDPAA-QLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQ 305
              L+G+ E    +    +  F   P    L  RP  F Q N  V   + + A  W+   
Sbjct: 180 MAILEGDEEIFLTENTRLEERFNDVP----LFIRPKSFFQTNPHVAAKLYQTAREWVGEF 235

Query: 306 ADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQ 365
           A + + DLFCG+G F L  A +   +  +E     +  A  +A+   + N +F   D S 
Sbjct: 236 APKSLWDLFCGVGGFGLHCASKDIPLTGIEIEAEAIACAKMSAQMMGLDNVQFMALD-ST 294

Query: 366 PLAGTGWAAEGFSAVLLDPPRDGAFE-VVQGIARLKARRLVYVSCNPATLARDAQVLVGQ 424
             A    AA     ++++PPR G  E +   ++    R ++Y SCNP TLA+D   +  +
Sbjct: 295 DFAKGDAAATKPDLIIVNPPRRGIGESLCDALSEFAPRAILYSSCNPKTLAKDLVHI--R 352

Query: 425 GYRLKRAGILDMFPQTAHVEAMAL 448
           GY+L R  + D+FP + H E +A+
Sbjct: 353 GYQLTRVQLFDLFPHSDHFEVLAM 376