Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase from Klebsiella michiganensis M5al

 Score =  114 bits (284), Expect = 7e-30
 Identities = 111/380 (29%), Positives = 154/380 (40%), Gaps = 35/380 (9%)

Query: 93  CRYYD--RCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRA 150
           C  YD  RC  C    LP   QLA K   L   L   A      W AP  GPE G+R +A
Sbjct: 3   CALYDAGRCRSCQWLELPISQQLADKMADLRALL---ADAPVAEWCAPACGPESGFRNKA 59

Query: 151 RVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHL-PTVLRSLSKPQAL- 208
           ++ V   V+   L +  R  A +D+    DC +  Q    +   L P + R+   P  + 
Sbjct: 60  KMVVSGSVERPLLGMLHRDGAPEDLT---DCPLYPQSFAPVFAALKPFIARAGLTPYHVA 116

Query: 209 ------------------GHVELFSGTAEAVLVRHVAPLPAEDQARLQAFCEQANAQLWL 250
                             G +  F   +E  L +  A LPA      Q     AN Q   
Sbjct: 117 RRRGELKYILLTESRLDGGMMLRFVLRSETRLTQLRAALPALQALLPQLKVITANIQPVH 176

Query: 251 QGEGE-PAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADER 309
               E P  +    Q   A     + L  RP  F Q N  V + +   A  W+       
Sbjct: 177 MAIMEGPQEIFLTDQQALAENFNGVPLWIRPQSFFQTNPTVASRLYATARDWVRQLPVNH 236

Query: 310 VLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAG 369
           + DLFCG+G F L  A     +  +E     +  A  +A    +HN  F   D +Q   G
Sbjct: 237 MWDLFCGVGGFGLHCASPEMRLTGIEIAPEAIACAKQSAAELGLHNLHFQALDSTQFATG 296

Query: 370 TGWAAEGFSAVLLDPPRDG-AFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRL 428
            G   E    VL++PPR G   E+   ++R+    ++Y SCN  T+A+D   L   GYR+
Sbjct: 297 EG---EIPDLVLVNPPRRGIGDELCAYLSRMAPEFIIYSSCNARTMAKDIARL--SGYRI 351

Query: 429 KRAGILDMFPQTAHVEAMAL 448
           +R  + DMFP TAH E + L
Sbjct: 352 ERVQLFDMFPHTAHYEVLTL 371