Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Ralstonia sp. UNC404CL21Col

 Score =  289 bits (740), Expect = 1e-82
 Identities = 173/442 (39%), Positives = 257/442 (58%), Gaps = 22/442 (4%)

Query: 31  LDIERLAGDGRGIAFLD------GRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQA 84
           L+I  L G+ RGI  L       G+  FV GAL GE V  R    +    +A +  +L+ 
Sbjct: 7   LEIVSLDGEARGIGRLTNEDGSPGKVVFVEGALPGERVMYRSHRVKPSYEQASVVDILRQ 66

Query: 85  APERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEF 144
           +  R    C+++  CGGC++QHL   AQ+A+KQR L + L  +A ++P+    P++GP++
Sbjct: 67  SASRVTPQCKFFGVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDW 126

Query: 145 GYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSK 204
           GYR RAR+ VR       + VGF    S  +  +  C VL   + ++L  L  ++  LS 
Sbjct: 127 GYRYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSI 186

Query: 205 PQALGHVELFSG-TAEAVLVRHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPA--PVDP 261
            Q +  +EL  G    A+++R++ P+ AED+A L+ F +Q N Q WLQ +G     P  P
Sbjct: 187 VQRMPQIELAVGQDVTALVLRNLEPITAEDEAELRDFADQHNVQFWLQPKGPDTVYPFHP 246

Query: 262 AAQ-LGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNF 320
             + L + L  + + + ++P DF QVN Q+N  ++ +AL  L  Q  +R+LDLFCG+GNF
Sbjct: 247 LDRTLTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPSDRLLDLFCGIGNF 306

Query: 321 ALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAGTGWAAEG-FSA 379
            LP+A +AREV+ +EG +A+  RA ANA++N +     F       ++    AA G F  
Sbjct: 307 TLPMATRAREVMGIEGSEALTTRALANAQHNGLDAKTTFACRNLFEVSADDIAALGKFDR 366

Query: 380 VLLDPPRDGAFEVVQGIARLKAR----------RLVYVSCNPATLARDAQVLVGQ-GYRL 428
            L+DPPR+GA  V + +A L  R          R+VYVSCNPATLARDA +LV + GYRL
Sbjct: 367 WLIDPPREGALAVSKALAELSQRGGEAADLLPKRIVYVSCNPATLARDAGLLVHEAGYRL 426

Query: 429 KRAGILDMFPQTAHVEAMALFE 450
             AG+++MFP T+HVE+MA+FE
Sbjct: 427 AGAGVVNMFPHTSHVESMAVFE 448