Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  521 bits (1343), Expect = e-152
 Identities = 343/942 (36%), Positives = 519/942 (55%), Gaps = 64/942 (6%)

Query: 1   MLDRLGIRSRVLLLALLPAGLMALVLGSYFTWLQQNDLRTQLLQRGKMIAEQLAPLAAPA 60
           M  R G+R+RV+ L L P  ++ L+L + F++ + +DL TQ++  G  I E LA  +  A
Sbjct: 1   MTQRYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDA 60

Query: 61  MARLAPAQLERIAAQTLEQAD--VRAVAFLAPDRTRLAHAG--PSMLNLPPSGGTGTQLL 116
           +   +   + RI +    +    VR++A    +      +   P+   L          L
Sbjct: 61  LRMQSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFL 120

Query: 117 QRSGNDATRYLM--PVFGHHRDLAT-DAVPAEAERLLGWVEIELSHDGTLLRGYRNLFTS 173
             S  D    ++  P+      L   DA PA    ++G++ IEL      L+ Y+ +F++
Sbjct: 121 SSSVIDENTLILRTPIISERTVLDNGDANPATP--VMGYIAIELDLSSLRLQQYQEIFSA 178

Query: 174 LLLILACLALSGLLALRMSRTINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELAHGI 233
            L+++  + LSG+ A R+   +  PI  +K+ V++++ GHL+ R+      ELD L  GI
Sbjct: 179 GLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGI 238

Query: 234 NRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANM 293
           N MA +L   H E+QHSIDQAT D+R+ LE +EIQN+ELD+A+K A EA+R+KSEFLANM
Sbjct: 239 NAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANM 298

Query: 294 SHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLV 353
           SHE+RTPLNG++GFT  + K+++T  Q DYL TIEKSA+NLL IIN+ILDFSK+EAGKL 
Sbjct: 299 SHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLA 358

Query: 354 LDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNA 413
           L++IPF  ++++++ + + A +AH K LE+   I    P  +VGDPLR++Q+LTNLV N+
Sbjct: 359 LENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNS 418

Query: 414 IKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPG 473
           IKFT  G I V   +    +D   L+  V+DTGIG+S +    LFQAFSQAD S++R+ G
Sbjct: 419 IKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYG 478

Query: 474 GTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNLPKAHDDAEALPPQPLLGRRAAI 533
           GTGLGLVI+++L+  MGGEI + S   +GS FW +L L         LP          +
Sbjct: 479 GTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRL-----HTTELP----------L 523

Query: 534 VDGHELARQALEHQ---LEDCGLSVSLFASYDQLLQGVQAASQAGLPFEFAVLGANLGNL 590
            DG+     +L H+   L +  +  +       +  G++   ++ +P E  V    L NL
Sbjct: 524 NDGYN--ADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEEQHVYDYVLLNL 581

Query: 591 SPEQ------LGHYHQQLERYHCQCVVLCPTTEQALYHPYLPNGHGQLLSKPTCTRKLRR 644
           +P +      +  + Q+        +V  P+TE AL    +     + +SKP   +K   
Sbjct: 582 APSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKK--- 638

Query: 645 LLLELVQPRRPLAEGSNPNGQRRPKILC---VDDNAANLLLVKTLLEDLGAEVLAVNNGY 701
           LL  L   +  LA  S P  Q     LC   VDDN ANL L+  LL++    V++  +G 
Sbjct: 639 LLQTLAAQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQ 698

Query: 702 AAVQAVQEELFDLVLMDVQMPGMDGRACTEQIRLWENTQSGNPLPIVALTAHAMANEKRA 761
            A++  Q   FD++LMD+QMP MDG    + I+     +     P++A+TAHAMA E+  
Sbjct: 699 EAIEQAQSRQFDIILMDIQMPHMDGVTACKAIK---QLKGYRDTPVIAVTAHAMAGERDR 755

Query: 762 LLHSGMDDYLTKPISERQLAQVVMKWT------GLSLGTPQQAQAELLTNG------DEL 809
           LL +GMDDYLTKPI E  L QV++ W+       ++  TP    A +++N        E 
Sbjct: 756 LLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPDG-AAVISNALPSSPPAEE 814

Query: 810 KVLDPEEGLRLAAGKADLAADMLSMLLASLDTDREAIRAARAADD--RNGLIEQVHRLNG 867
            ++D    LR +A K DLA +ML ML+  L      +  A   ++   + L+  +H+L+G
Sbjct: 815 AIIDWPVALRQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHG 874

Query: 868 ASRYCGVPQLRAACQRSETLLKQDNPQAQQALDELDSAISRL 909
           +  Y GVP+LR  C   E  L+        ++DEL+  +  L
Sbjct: 875 SCSYSGVPRLRKICASLEQALRNG-----ASIDELEPELFEL 911