Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 941 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella amazonensis SB2B

 Score =  514 bits (1325), Expect = e-150
 Identities = 353/964 (36%), Positives = 529/964 (54%), Gaps = 91/964 (9%)

Query: 2   LDRLGIRSRVLLLALLPAGLMALVLGSYFTWLQQNDLRTQLLQRGKMIAEQLAPLAAPAM 61
           + +  +RS VL+LAL P  L+ ++LGSYFT  +  DL   L   G  I E LA  A  ++
Sbjct: 7   MTKYSLRSWVLVLALAPTILVGILLGSYFTINRFYDLEDTLKDMGSNIIEPLAISAEQSL 66

Query: 62  AR---------LAPAQLERIA-AQTLEQADVRAVAFLAPD------------------RT 93
           +          LA AQL +    +++   D+    F+                      T
Sbjct: 67  STNNREITKILLARAQLNKSTLVKSIAIFDINNQLFVTSHYHKDFEVMRYKEALESLKET 126

Query: 94  RLAHAGPSMLNLPP------SGGTGTQLLQRSGNDATRYLMPVFGHHRDLATDAVPAEAE 147
           +  H G +++   P          G  + + SG  +   +MP      D +  A      
Sbjct: 127 QFEHEGDTLIVRTPIFAISSKQPMGDNIDEGSGRFSEAVVMP------DNSNAA------ 174

Query: 148 RLLGWVEIELSHDGTLLRGYRNLFTSLLLILACLALSGLLALRMSRTINDPIERIKHAVN 207
            LLG+V + L+ +  LL  +R    + +++L  + L+ L   R+ + +  PI  +   V 
Sbjct: 175 -LLGYVSMMLNKEKALLEQHRAAVAAFIIVLIGVQLNLLFTFRLVKNVTQPITDMVKLVG 233

Query: 208 QLKDGHLEERLPTMGSHELDELAHGINRMAETLQNAHEELQHSIDQATEDVRQNLETIEI 267
           ++++G L+ RL      ELD L  GIN MA +L   H+E+Q +IDQAT D+R+ LE IEI
Sbjct: 234 KIREGKLDARLEGNLIGELDLLNRGINAMAASLSEYHDEMQQNIDQATSDLRETLEQIEI 293

Query: 268 QNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTI 327
           QNI LD A+K+A EASRIKSEFLANMSHE+RTPLNG++GF   L K+ +   Q++Y+ TI
Sbjct: 294 QNIALDRAKKDAQEASRIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHSSQMEYIKTI 353

Query: 328 EKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLI 387
           E+SA +LL IIN+ILDFSK+EA K+VL+++PF LR  ++DT+ +LA +AHAK LE +  +
Sbjct: 354 ERSATSLLQIINDILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVDV 413

Query: 388 YRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGI 447
             + P +L GD +RL Q++TNL+ NAIKFT EG++ ++  L    ++   LR  V DTGI
Sbjct: 414 DANVPENLSGDVMRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTGI 473

Query: 448 GLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQ-MGGEIGVDSTPGEGSQFW 506
           G+ P+    LFQAF QAD+S++R+ GGTGLGLVI+KRL+ Q MGG IG  S  G+GS FW
Sbjct: 474 GIDPEQQELLFQAFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSFW 533

Query: 507 ISLNLP----KAHDDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYD 562
            ++ L       HD    LP + L+G    + +  +L R+++  +L+D  + V+L ++ D
Sbjct: 534 FTVPLQLSPFPVHD---TLPLEKLIGHSVLLFEPRKLTRESIARKLKDWHMMVTLASNED 590

Query: 563 QLLQGVQAASQAGLPFEFAVLGANLGNLSPEQLGHYHQQLERYHCQCVVLCPTTEQALYH 622
           +L + +            A+L +     S E L  +  +++ +    ++L    +  +Y 
Sbjct: 591 ELERHLDDRHYD------AILLSGQSCESCEDLQRHLSRVKDHTGSLLLLNDCLDPEVYT 644

Query: 623 PYLPNGHGQLLSKPTCTRKLRRLLL-----ELVQPRRPLAEGSNPNGQRRPKILCVDDNA 677
             +      +L  P    KL + L+     +   P+  LA  + P+ +    +L VDDN 
Sbjct: 645 QEMEPFVDLVLQLPVSELKLAQNLIFPPVKKNAAPKPALA--TKPSARHPLNVLAVDDNL 702

Query: 678 ANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDGRACTEQIRLWE 737
           ANL L+ TLL++L A V+AV++G  AV   +   FDL+ MD+QMPG DG   T  IR  +
Sbjct: 703 ANLKLIDTLLKELVANVVAVSSGDQAVALAKSRSFDLIFMDIQMPGTDGVTATRLIR--Q 760

Query: 738 NTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKWTGLSLGTPQQ 797
           ++ + N  PI+A+TAHA+  E+  +  SGMD YL KPI E  L  V+ +W    L  P+ 
Sbjct: 761 DSLNRN-TPIIAVTAHAINEERERIQASGMDGYLPKPIDEAALKGVISRW----LTRPK- 814

Query: 798 AQAELLTNGDELKVLDPEEGLRLAAGKADLAADMLSMLLASLDTDREAIRAARAADDRNG 857
                 T+ D    L+ E  L  A  K DLA DML M+L SL      I  A A  D   
Sbjct: 815 -----FTHFDS-NTLNWELCLSQANQKEDLAIDMLKMMLESLPGTVNDIELAMARSDNES 868

Query: 858 LIEQVHRLNGASRYCGVPQLRAACQRSETLLK------QDNPQAQQALDEL---DSAISR 908
           ++  VH+L+GAS YCGVP  +  CQ+ E+ LK         P+  + LDEL   +SA ++
Sbjct: 869 MLYTVHKLHGASCYCGVPTTQKLCQQIESALKGGADVADVEPEILELLDELTKVESAATQ 928

Query: 909 LAAQ 912
           + +Q
Sbjct: 929 VISQ 932