Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 1287 a.a., signal transduction histidine kinase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  308 bits (789), Expect = 1e-87
 Identities = 195/533 (36%), Positives = 306/533 (57%), Gaps = 30/533 (5%)

Query: 271  ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKS 330
            EL  AR++AL+ASR KS+FLANMSHEIRTP+N +LG   +  ++E+ PR  DYL   +++
Sbjct: 522  ELADAREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQMTLQTELPPRPRDYLEKTQQA 581

Query: 331  ADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRD 390
            A +LL ++N+ILDFSKIEAG++ L+   F+L+ L+ D  +IL+     K +EL+  +   
Sbjct: 582  AKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQVQQKDIELVYQVAPS 641

Query: 391  TPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450
             P  L+GD LRL+QIL N+++NAIKFT +G I+ R   +   +    L I +QD+GIG++
Sbjct: 642  VPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDGTCHLHIEIQDSGIGMT 701

Query: 451  PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLN 510
             +    +F+ FSQAD+S++R+ GGTGLGL I++ L+  M GEI V S+PG GS F I + 
Sbjct: 702  NEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRVTSSPGVGSTFTIDVQ 761

Query: 511  LPKAHDDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYDQLLQGVQA 570
            L    D  +  P     G R  +V+ +  +R      L D G  V+   +    ++ ++ 
Sbjct: 762  L--GFDATKYRPGARFSGVRVLLVEDNHTSRLVFSELLRDLGCEVTALNNGLTAMKTIER 819

Query: 571  ASQAGLPFEFAVLGAN--LGNLSPEQLGHYHQQLERYHCQ-CVVLCPTTEQALYHPYLPN 627
             +    P  F VL A+  L  L   +L  + + L+    Q  +++     QA+    L +
Sbjct: 820  MA----PDSFDVLLADWQLPGLDGLELASWIRHLDSLSRQPGIIIVTAFSQAMLEAQLKH 875

Query: 628  GHGQL---LSKPTCTRKLRRLLLELVQPRR----------PLAEGSNPNGQRRPKILCVD 674
               +    L KP     + R L  +++             PLA    P+   R ++L V+
Sbjct: 876  REEEFDATLIKPVTREMVSRCLQSVLERHNNDGLDMLSHLPLA----PSLVGR-RLLLVE 930

Query: 675  DNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDGRACTEQIR 734
            DNA N L+  +LL  LGAEV+   +G+ A++ +  + FDLVLMD+QMPGMDG   T +IR
Sbjct: 931  DNATNRLVATSLLGQLGAEVIEAVDGFQALKLLSRQQFDLVLMDIQMPGMDGYQTTRKIR 990

Query: 735  LWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKW 787
               N      LPI+A+TA+AM  +K+A   +GM+ +++KP    ++A  ++++
Sbjct: 991  ---NELMLTDLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEVATKLLQY 1040