Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  227 bits (579), Expect = 3e-63
 Identities = 126/251 (50%), Positives = 161/251 (64%), Gaps = 5/251 (1%)

Query: 270 IELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEK 329
           +EL  A++ A  A+R K EFLANMSHEIRTP+NGILG T L   S +TP Q DYL  ++ 
Sbjct: 520 LELQQAKEAAESANRAKGEFLANMSHEIRTPMNGILGMTDLALDSALTPEQRDYLEMVKS 579

Query: 330 SADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYR 389
           SAD LL IIN+ILDFSKIEAGKL L+ I F+LR L+++TL  L   A  + L L   +  
Sbjct: 580 SADALLVIINDILDFSKIEAGKLELEHIHFHLRQLLRETLKPLELRARQRSLTLRCEVPE 639

Query: 390 DTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGL 449
           +     +GDP RL+Q+L NLV NAIKFT EG + VR    D       L  +V DTGIG+
Sbjct: 640 EVADGYLGDPGRLRQVLINLVGNAIKFTEEGQVAVRVEARD-----GLLHFAVSDTGIGI 694

Query: 450 SPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509
                + +F+AFSQAD+S+ R+ GGTGLGL I  RL+  MGG + V+S PG+GS F  + 
Sbjct: 695 PADKQQLIFEAFSQADSSVTRRFGGTGLGLTICTRLVRLMGGHMWVESDPGQGSTFHFTA 754

Query: 510 NLPKAHDDAEA 520
            L      AE+
Sbjct: 755 RLEAVAGPAES 765



 Score =  105 bits (262), Expect = 1e-26
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 14/213 (6%)

Query: 669 KILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDGRA 728
           ++L  +DN  N  LV TLL+  G  V   +NG  A+ A+  + FDLVLMD+QMP M G  
Sbjct: 781 RLLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALATDHFDLVLMDMQMPVMGGLE 840

Query: 729 CTEQIRLWENTQ-SGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQ----LAQV 783
            T +IR  E  +  G  LPIVA+TA+AMA ++   L +GMD Y++KP+   +    +A V
Sbjct: 841 ATRRIRAAEAARGDGQHLPIVAMTANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMADV 900

Query: 784 V----MKWTGLSLGTPQQAQAELLTNGDE-----LKVLDPEEGLRLAAGKADLAADMLSM 834
           +    ++  G +   P   QA +     E     L+  D  E +    G  +L A ++ M
Sbjct: 901 LPPERLRQAGAAAAIPADGQAAVAAAPSESAPAALRRCDRAEAVARLEGDEELFAMLVKM 960

Query: 835 LLASLDTDREAIRAARAADDRNGLIEQVHRLNG 867
               L    + + AA A  D   L  + H L G
Sbjct: 961 FSDDLPNYLQRLNAALAGQDMEALSREAHTLKG 993