Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  273 bits (698), Expect = 3e-77
 Identities = 195/555 (35%), Positives = 276/555 (49%), Gaps = 29/555 (5%)

Query: 245 EELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGI 304
           ++L   +    EDV +     +    EL  AR++A  A+R KSEFLANMSHEIRTP  GI
Sbjct: 317 DDLSRGVVWTFEDVTER----KAAESELRHAREKAEAANRAKSEFLANMSHEIRTPFTGI 372

Query: 305 LGFTHLLQKSEMTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDL 364
           LG   LL  + +  +Q  Y+     S   LL I+N+ILD SKIEAGKLV+     +L  L
Sbjct: 373 LGVLDLLLHTPLNEKQERYIRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLL 432

Query: 365 IQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVV 424
           + +   + A AA  K LE    I    P  + GDP+RL+QI+ NL++NAIKFT  G + +
Sbjct: 433 LGELTEVQAAAAAQKGLEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVEL 492

Query: 425 RAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKR 484
                        LR+ V+D+GIG+ P+   T+F  F+QAD+S  R  GGTGLGL I K+
Sbjct: 493 DIECTRIAPGRQHLRVEVRDSGIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQ 552

Query: 485 LIEQMGGEIGVDSTPGEGSQFWISLNLPKAHDDAEALPPQPL--------LGRRAAIVDG 536
           L+E M G IGV S  GEGS FW  + LP++      +P  P            R  +VD 
Sbjct: 553 LVELMHGSIGVSSNSGEGSCFWFDIELPESDPTVSPVPVLPAGSPITALPRDTRILLVDD 612

Query: 537 HELARQALEHQLEDCGLSVSLFASYDQLLQGVQAASQAGLPFEFAVLGANLGNLSPEQLG 596
            E  R+ L   L      V   A+  + +   ++     +  +  + G + G  +  Q+ 
Sbjct: 613 TEANREVLAEYLAQAHCQVRQAANGLEAVTLAESWQPDAILMDCQMAGMD-GYEATRQI- 670

Query: 597 HYHQQLERYHCQCVVLCPTTEQALYHPYLPNGHGQLLSKPTCTRKLRRLLLELVQPRRPL 656
              Q+ +R     + L     +      L  G    L KP   + L   + + +      
Sbjct: 671 -RIQEGQRRRTPIIALTAFVMRGDREKCLAAGMDDYLPKPVDAQTLIATIGKWL------ 723

Query: 657 AEGSNPNGQRRP----KILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELF 712
            EG   N  R P    +IL VDDN         LLE LG +V + ++G  A+Q   E  F
Sbjct: 724 -EGRETNPARTPRFSGRILLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEADF 782

Query: 713 DLVLMDVQMPGMDGRACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLT 772
           DLVLMD +MPG+DG A T   R W   + G P  I+ALTA      +     +GM+D+L 
Sbjct: 783 DLVLMDCRMPGLDGCATT---RAWRARERGTPTAIIALTAGDPDESRAQCREAGMNDFLA 839

Query: 773 KPISERQLAQVVMKW 787
           KP SE++L  ++ +W
Sbjct: 840 KPFSEQELVTLLRRW 854