Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  337 bits (863), Expect = 4e-96
 Identities = 222/665 (33%), Positives = 343/665 (51%), Gaps = 46/665 (6%)

Query: 266  EIQNIELDMARKEALE--ASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDY 323
            E + I  +MA+ +AL   A++ K++FLANMSHEIRTP+N ++G THL  K+++  RQ +Y
Sbjct: 514  EERRILAEMAQAKALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQREY 573

Query: 324  LNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLEL 383
            L  I+ S+ +LLGIIN+ILDFSK EAGKL ++ I F+L  +++D  ++++  A +K LE 
Sbjct: 574  LRKIQHSSQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEF 633

Query: 384  LSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQ 443
            +  +  + P  LVGDPLR+ Q+L N  SNA+KFT  G + +   LE++      LR +V 
Sbjct: 634  VIEMADEVPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVH 693

Query: 444  DTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 503
            DTGIG+   ++ TLF +F QAD+S  R+ GGTGLGLVI+KRL E MGG++G +S PG GS
Sbjct: 694  DTGIGIKAGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGS 753

Query: 504  QFWISLNLPKAHDDAEALPPQP-LLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYD 562
             FW +  L ++ +     PP+P L  RR  +VD H+ AR  +   L      VS   S +
Sbjct: 754  TFWFTARLGRSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGN 813

Query: 563  QLLQGVQAASQAGLPFEFAVLGANLGNLSPEQLGHYHQQLERYHCQCVVLC--------- 613
            + L  +Q AS AG P++   L   +  +         ++LE      V++          
Sbjct: 814  RCLAELQRASAAGEPYDIVFLDWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDELA 873

Query: 614  -PTTEQALYHPYLPNGHGQLLSKPTCTRKLRRLLLELVQPRRPLAEGSNPNG--QRRP-- 668
                E  L       G  ++L KP    +L   ++ ++         ++P       P  
Sbjct: 874  RSAGESGL------QGIEEILIKPVSPSQLFNTVMRILDHEDGPHSAADPEALPDLAPLA 927

Query: 669  --KILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDG 726
              ++L V+DN  N  +    L      V   ++G +A++ V+++ +D++LMD+QMP MDG
Sbjct: 928  GLRVLLVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDG 987

Query: 727  RACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMK 786
             A T +IR          LPI+A+TA+AM  ++   L +GM+D++ KP+  R L   ++K
Sbjct: 988  IAATREIR---RQFPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLK 1044

Query: 787  W--TGLSLGTPQQA-----------QAELLTNGDE-----LKVLDPEEGLRLAAGKADLA 828
            W   G  L  PQ A                   D      +  LD   GL  A  +  L 
Sbjct: 1045 WLAPGAPLVAPQAAAPLPGTVTPTPPVAAPAKADRQPFAGIPGLDATLGLHQALDREGLY 1104

Query: 829  ADMLSMLLASLDTDREAIRAARAADDRNGLIEQVHRLNGASRYCGVPQLRAACQRSETLL 888
              ++   ++      + +  A  A D  G   + H L G S   G   LR   +  E  +
Sbjct: 1105 LRLMDKFVSGQRDAPQRLARAIDAGDWVGAEREAHTLKGVSAQIGAMPLRDLAEGLEHAI 1164

Query: 889  KQDNP 893
            +Q +P
Sbjct: 1165 RQRDP 1169