Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  304 bits (779), Expect = 2e-86
 Identities = 235/654 (35%), Positives = 326/654 (49%), Gaps = 42/654 (6%)

Query: 271  ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKS 330
            E+  A++ A  A+R KS+FLANMSHEIRTP+NG++G T L   +E+T  Q DYL  ++ S
Sbjct: 398  EILRAKEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMS 457

Query: 331  ADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRD 390
            A+ LL II++ILDFSKIEAG+L ++ IPF+L  +  D L  +A  A  K LELL+     
Sbjct: 458  ANALLSIIDDILDFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPG 517

Query: 391  TPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450
             P  L+GDP RL+QIL NL+ NAIKFT  G I V   L +       L   V DTGIG++
Sbjct: 518  VPRRLLGDPGRLRQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIA 577

Query: 451  PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLN 510
            P+    +F+AF+Q D+S  R+ GGTGLGL I  RL E MGG I VDS PG+GS F  +L 
Sbjct: 578  PEKQEHIFEAFAQEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQ 637

Query: 511  LPKAHDDAEALPPQPLLGRRAAIVDGHELARQ--ALEHQLEDCGLSVSLFASYDQLLQGV 568
            LP   D A A  P+  L  + A++     ARQ   L+  L   G +V   AS  + L  +
Sbjct: 638  LPT--DGAAAPEPERRLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLALL 695

Query: 569  QAASQAGLPFEFAVLGANLGNLSPEQLGHYHQQLERYHCQCVVLCPTTEQALYHPYLPNG 628
            +     G+  +   +  + G+L    L H  +   R     ++L P+  +         G
Sbjct: 696  EQGQWDGVVADSRPVDGDAGDL----LEHLARSPGRVPL-LMLLSPSRMRQEIARCKALG 750

Query: 629  HGQLLSKPTCTRKLRRLLLELVQPR-----RPLAE--GSNPNGQRRPKILCVDDNAANLL 681
             G  L KP    +L R L  L++P        +AE  G+ P G    ++L  +D+  N  
Sbjct: 751  VGHYLGKPALADELWRSLQALLEPAVAGVPATVAEAAGTPPAGL---EVLLAEDHPVNQQ 807

Query: 682  LVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDGRACTEQIRLWENTQS 741
            L++ +LE +G  V    +G  AV A     FDLVLMD+QMP M G   T  IR  E  + 
Sbjct: 808  LMRNMLERMGHRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGGEQATRLIRADEQARG 867

Query: 742  GNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKWTGLSLGTPQQAQAE 801
              PL I AL+A A   +++  L +GMD YL KP+ ++ L +V+       L  P Q +  
Sbjct: 868  LAPLRIYALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVL-----AGLARPGQEEGG 922

Query: 802  LLTNGDELKVLDPEEGLRLAAGKADLAADMLSMLLASLDTDREAIRAARAADDRNGLIEQ 861
                         + G  L     D+   +  +       +  A+  A AA D   L   
Sbjct: 923  F------------DYGRMLEGADRDVLQIIGDVFPGLARLEMAAMEEALAAADWERLGRV 970

Query: 862  VHRLNGASRYCGVPQLRAACQRSETLLKQDNPQAQQALDELDSAISRLAAQARL 915
             H L GA+   G   L       E L         QA+     A  RLA +A L
Sbjct: 971  AHSLRGAAANFGPSPLVQQATEVERL------APHQAVQPAHLAELRLALEALL 1018