Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  325 bits (832), Expect = 2e-92
 Identities = 217/670 (32%), Positives = 345/670 (51%), Gaps = 31/670 (4%)

Query: 261  NLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQ 320
            ++  +++ + EL +A+ EA  AS+ K +FLANMSHEIRTP+N I+G + L  ++++  +Q
Sbjct: 1015 DMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQ 1074

Query: 321  LDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQ 380
             +YL  IE+++ +LL IIN+ILDFSKIEAGKL ++++ F L  +++D   + +  A  KQ
Sbjct: 1075 KNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQ 1134

Query: 381  LELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRI 440
            +ELL  +  + P  L+GDPLRL Q+L NL++NAIKFT  G +++   L ++  D   LR 
Sbjct: 1135 IELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRF 1194

Query: 441  SVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPG 500
            SV+D+GIGL+ +    LF++F+QAD S  R+ GGTGLGL ISK+L+E MGG IGV+S  G
Sbjct: 1195 SVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLG 1254

Query: 501  EGSQFWISLNLPKAHDDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCGLSVSLFAS 560
             GS F+ ++ L       +    Q L G    + D +  AR  +   LE  G +V    S
Sbjct: 1255 HGSTFFFTVKL-CISSGQKLFVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRS 1313

Query: 561  YDQLLQGVQAASQAGLPFEFAVLGANLGNLSPEQLGHYHQQLERYHCQCVVLCPTTEQAL 620
             D   + +   SQ    +  A++   + NL   +     +Q  +   + +++     Q  
Sbjct: 1314 GD---EAIMRCSQQ--EYAVALIDWKMPNLDGIETAKQIKQQTKNAPRILMVSAHANQDF 1368

Query: 621  YHPYLPNGHGQLLSKPTCTRKLRRLLLEL-----VQPRRPLAEGSNPN---GQRRPKILC 672
                   G    +SKP    +L   ++       + P R   +   P      +  +IL 
Sbjct: 1369 LTQIEQLGLAGYISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPELLLPLKGKRILL 1428

Query: 673  VDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDGRACTEQ 732
            V+DN  NL +    LE +G  +    NG  A+  + ++ FDLVLMD QMP MDG   T+ 
Sbjct: 1429 VEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKA 1488

Query: 733  IRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKWTGLSL 792
            IR          LP++A+TA+AMA +K   L +GM+D++ KPI    L Q ++K+ G  +
Sbjct: 1489 IRQRPELAQ---LPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLGAPV 1545

Query: 793  GTPQQAQ-------------AELLTNGDELKVLDPEEGLRLAAGKADLAADMLSMLLASL 839
             + + A+              E +    E   LD + GL+L      L   +      S 
Sbjct: 1546 PSLENAEFVVNESLNPLNLDVESVVKWPEHPELDIDRGLQLVQNSKRLYQRIFDRFATSQ 1605

Query: 840  DTDREAIRAARAADDRNGLIEQVHRLNGASRYCGVPQLRAACQRSETLLKQDNPQAQQAL 899
                + I  A A++ R   +   H L G +      +L    ++ E  L  +N   Q  L
Sbjct: 1606 RNVVDQINKALASNKREDAVRMAHTLKGLAGNLSSSKLAELARQLELHL-SENADYQVEL 1664

Query: 900  DELDSAISRL 909
            D++   ++ +
Sbjct: 1665 DQIQILVASI 1674