Pairwise Alignments

Query, 262 a.a., metallopeptidase, M23B subfamily from Pseudomonas putida KT2440

Subject, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

 Score =  189 bits (479), Expect = 8e-53
 Identities = 111/297 (37%), Positives = 156/297 (52%), Gaps = 39/297 (13%)

Query: 3   SLLVGCSSTSSNSARVVDRNNTVPKRPAVTSGQYIVKPGDTLFSIAFRYGWDYKELAARN 62
           SLL GC++ +      + ++    +R +     Y VK GDTL+ IA+    D  +L + N
Sbjct: 15  SLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYN 74

Query: 63  GIQAPYTIRPGQAIRF-----------SSGSSSRTTVVSSPSSSSRTTVTRRPVGSTATA 111
            +  PYTI PGQ I+             +G ++   V SS S+S     T   V  T + 
Sbjct: 75  DLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSK 134

Query: 112 PASTSKPATSAPSAP--------------------APV--------VATVPAAERAVGGW 143
            ++T      + ++                      PV        VA    ++  +  W
Sbjct: 135 SSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKW 194

Query: 144 TWPANGVLIGKFASNGSLNKGIDIAGDLGQPVFAASDGAVVYAGSGLRGYGELIIIKHSD 203
            WP  G +I  F++    NKGIDIAG  GQ V A +DG VVY+G+ LRGYG LIIIKH++
Sbjct: 195 LWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNE 254

Query: 204 TYVSAYGHNRRLLVREGQQVKAGQSIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLP 260
            Y+SAY HN +LL +EGQ V+AGQ IA MGS+GT+ V+LHFEIR QGK V+P ++LP
Sbjct: 255 HYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311