Pairwise Alignments

Query, 352 a.a., tRNA pseudouridine synthase D from Pseudomonas putida KT2440

Subject, 430 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 21  LKAVAEDFQVDE------VLDIPLSGQGEHLWLW--------VEKRDLNTEEAARRLARA 66
           LK   EDF V+E      VL++      E +  W        VEK + NT +A +++ RA
Sbjct: 59  LKKYPEDFIVEEITPEGTVLEVGKEIGFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRA 118

Query: 67  AGVPVRSISYAGLKDRQALTRQWFSLHLPGKADPDLSRAEDASLRVLKQVRHQRKLQRGA 126
                ++  +AG KD+ A+T Q F      K   +    +D  +R +++    +KL+ G 
Sbjct: 119 TKTKRKNFGFAGTKDKFAVTTQRFGCFGLKKEQLENINIKDIVIRDVQKT--NKKLRMGG 176

Query: 127 HSANGFTLRLTALAADHQAVDARLEQLRQQGVPNYFGTQRFG 168
              N FT+++  L    + +  R+  L+   V NY+G QRFG
Sbjct: 177 LWGNKFTIKIRDLNLSEKEI-KRISDLKLDYVLNYYGIQRFG 217