Pairwise Alignments

Query, 352 a.a., tRNA pseudouridine synthase D from Pseudomonas putida KT2440

Subject, 389 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 26  EDFQVDEVLDIPLSGQGEHLWLWVEKRDLNTEEAARRLARAAGVPVRSISYAGLKDRQAL 85
           EDF V+E+L+  L+  G +    ++K  +   +A   L++   VP + I Y GLKDR A+
Sbjct: 8   EDFIVNEILEYELNDYGNYFLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGLKDRHAI 67

Query: 86  TRQWFSLHLPGKADPDLSRAEDASLRVLKQVRHQRKLQRGAHSANGFTLRLTALAADHQA 145
           T Q+ S+    K    LS  ED +L++      ++ L+ G    N F +   A+  D   
Sbjct: 68  TTQYVSI---PKEYGKLSLDED-NLKLEYVGTIEKPLKIGRLYGNRFEIIARAVDKDEFL 123

Query: 146 VDARLEQLRQQGVPNYFGTQRFG 168
             A   +    G PNY+  QRFG
Sbjct: 124 KIADNIRNLSSGAPNYYDDQRFG 146



 Score = 23.9 bits (50), Expect = 0.008
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 318 LQLEFVLPAGCFATVVVREVVDLV 341
           + LEF L  G +AT++++ V +++
Sbjct: 366 IDLEFSLKKGSYATIILKRVFNIL 389