Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score = 1310 bits (3389), Expect = 0.0
 Identities = 663/1178 (56%), Positives = 861/1178 (73%), Gaps = 25/1178 (2%)

Query: 1    MSVP-FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGA 59
            MS P F+HLR+HS+FS+VDGL ++ PL K +  M MPA+A+TD +N+C LVKFY TA   
Sbjct: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60

Query: 60   GIKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREW 119
            G+KPI GAD  L   +    L+++  LA +  GY+NLT LIS+ +  G      ++ + W
Sbjct: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120

Query: 120  IAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEE 179
            +   +EGLI LS GK G++G ALL G Q + E  ++ +   F + FY+E+ RT RA +E 
Sbjct: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180

Query: 180  YVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYL 239
            Y+H A+ +A++   P+VATN+V FI +  F+AHE RV I +G+TL+DPRRP+ YS +QYL
Sbjct: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240

Query: 240  KSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEG 299
            +S  EM ELF+D+P+A+AN+VEIAKRCN+ V+LG+YFLP+FPT  GM I+D+L   + EG
Sbjct: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREG 299

Query: 300  LEERLAVLWPKETTPNYEEKRQV-YLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDV 358
            LEERL  L+P    P    KR+  Y +RL+ ELD+I QMGFPGYFLIVM+FI+W+K+ND+
Sbjct: 300  LEERLEFLFPD---PEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDI 356

Query: 359  PVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418
            PVGPGRGSGAGSLVAY LKITDLDPL YDLLFERFLNPERVSMPDFDVDFCMD RD+VID
Sbjct: 357  PVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVID 416

Query: 419  YVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYE 478
            +VAE YGR+AVSQIITFGTMAAKAV+RDV RV G  +G  DR+SK++P + GMTLEKA+ 
Sbjct: 417  HVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFI 476

Query: 479  QEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGG 538
             E  L++    DE+ +E+ D    LEG TR  GKHAGGVVI+PT +TDF+PI CD EG  
Sbjct: 477  AEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNF 536

Query: 539  LVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKT 598
             VTQFDK+DVE AGLVKFDFLGLRTLTII WA+ ++N    K   P + I+ IPLDD ++
Sbjct: 537  PVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARS 596

Query: 599  YELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKH 658
            +  LQ A+TTAVFQLESRGMKELIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKH
Sbjct: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656

Query: 659  GRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKK 718
            GR  ++YP   +Q+E LK +L PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKK
Sbjct: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716

Query: 719  PEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKT 778
            PEEMAKQR  F EG   N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLKT
Sbjct: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776

Query: 779  HYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLG 838
            HYPA FMAAV++ADM NT+KVV LV+E ++M L +  PD+N   ++F V+++G IVYG+G
Sbjct: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIG 836

Query: 839  AIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFH 898
            AIKGVGEGP+EAI+EAR +GG FKDLFDFC RIDLK+VNKR ++ L+ +GALDRLGPH  
Sbjct: 837  AIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPH-- 894

Query: 899  DEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRK 958
                         RA +++++ +A++AA Q       G  D+FG + DA + +V   + +
Sbjct: 895  -------------RAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPE-EVEQKYTQ 940

Query: 959  VRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQ--TIAGMII 1016
            V E   K RL+GE++TLGLYLTGHP+DEY  E+ ++   R+ +  P+R  Q  T+AG++I
Sbjct: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000

Query: 1017 ALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSG 1076
            A RVM  K+G ++G +TLDDRSGR+E  L+++A       L+ D ++VV G+VS DDF+G
Sbjct: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNG 1060

Query: 1077 GLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHR-GACPITLEYTG 1135
            GL++  ++VM +  AR K A  L + +    +     +    ++  HR G  P+ + Y  
Sbjct: 1061 GLKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQR 1120

Query: 1136 SDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173
             DA+A L  G +W + P+D L+  L+   G + V L++
Sbjct: 1121 PDARARLTLGTEWRVTPSDTLLDELKQLLGHDQVELEF 1158