Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 870 a.a., DNA polymerase III subunit alpha from Synechococcus elongatus PCC 7942

 Score =  578 bits (1489), Expect = e-169
 Identities = 334/773 (43%), Positives = 475/773 (61%), Gaps = 39/773 (5%)

Query: 5   FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAG-IKP 63
           FV L +HS++SL+DG  ++  L      + MPA+A+TD   M   ++  K     G I+P
Sbjct: 3   FVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNIRP 62

Query: 64  ICGADLWLAGADPEAPLSRI-----CFLAMDPKGYRNLTELISRGWTDGQRNGLVI---- 114
           I G ++++  +  + P  R+       LA + KGY+NL +L S     G +   +     
Sbjct: 63  IIGNEMYVINSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHLQGFKGRGIFARPC 122

Query: 115 LQREWIAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNR 174
           + +E +    EGLI  SA   G+I  A+L  R D A  +   +   F E FY+E+Q    
Sbjct: 123 IDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYLEIQDHGS 182

Query: 175 ARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYS 234
             D       V +A +LG  LVATND  FI   D +AH+  +CI  G  + + +R R YS
Sbjct: 183 PEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVEDKRLR-YS 241

Query: 235 DQQYLKSAEEMAELFSD-LPD-----AIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI 288
             +YLKSAEEM +LF D LPD     AIANT+ IA +      LG+  +P FP P+G   
Sbjct: 242 GTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPVPDGYNE 301

Query: 289 DDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMD 348
           + Y+  VA +GL ERL           YE+  + Y DRL++E+ ++ +MGF  YFL+V D
Sbjct: 302 ETYMAEVARQGLAERL-------NCDRYEDCEEAYRDRLEYEIKMMHEMGFASYFLVVWD 354

Query: 349 FIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDF 408
           +IK+A++N++PVGPGRGS AGSLVAY + IT++DP+ + LLFERFLNPER SMPD D DF
Sbjct: 355 YIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDIDTDF 414

Query: 409 CMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468
           C+D RD+VIDYV + YG + V+QIITF  M +KAV++DVARV    YG ADR++K+IP  
Sbjct: 415 CIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPVA 474

Query: 469 VG--MTLEKAYEQEEILRDFL-KGDEDAR-EIW-DMALKLEGVTRGTGKHAGGVVIAPTK 523
            G    L+     +    +F  K ++DAR + W DMAL++EG  +  G HA GVVI+   
Sbjct: 475 RGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHAAGVVISAVP 534

Query: 524 LTDFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNL 583
           L +  P+  + + G ++TQ+  +D+EA GL+K DFLGLR LT+I+ A++++     +   
Sbjct: 535 LDEIVPLQRNND-GQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETSGQAID 593

Query: 584 PDLNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPG 643
           PD     +P+DD KTY+LL K +   VFQLES GM+++++ LKP  LED+ +++AL+RPG
Sbjct: 594 PDR----LPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRPG 649

Query: 644 PLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYT 703
           PL +G++  FINRKHGR  +     DY  + L+P+L  TYGI++YQEQ+M+IAQ M GYT
Sbjct: 650 PLDAGLIPKFINRKHGREAI-----DYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYT 704

Query: 704 LGGADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGY 756
           LG AD+LRRAMGKKK  EM K +  F+EG   N +   +A  +FD +  FA Y
Sbjct: 705 LGEADLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757