Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  303 bits (775), Expect = 7e-86
 Identities = 286/1112 (25%), Positives = 486/1112 (43%), Gaps = 130/1112 (11%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            F  L   + FS ++G    + +        +  + I D++++  +V+ +  A   G    
Sbjct: 7    FCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEGYPFQ 66

Query: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPAS 124
             GA L  A   P+     I     + +G+ +L  L+S G    ++    +   + +    
Sbjct: 67   PGARLVFADGTPD-----ILAYPKNRRGWGHLCRLLSAGNLRSKKGDCTLHLADLLEWQE 121

Query: 125  EGLIALSAGKEGDIGMALLAGRQD--EAEALLQDWMGMFPERFYVEVQRTNRARDEEYVH 182
            E L+ +  G+          GR +    E LL         R Y+ +       D     
Sbjct: 122  ELLLIVMQGE----------GRPEPESLEVLLGTLKEHAGNRLYLGLAPHYDGFDRHDFA 171

Query: 183  AAVALADKLGAPLVATNDVRF-------IKQADFDAHETRVCIGEGWTLDDPRRPRCYSD 235
               A+A K G  L+ATND  +       +        E     G G+ L         + 
Sbjct: 172  VLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQK-------NA 224

Query: 236  QQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHV 295
            +++LK   EMA LFSD P+AIANT +  +     +    +  PD    +G    + LR +
Sbjct: 225  ERHLKGPREMARLFSDYPEAIANTRKFFRELAFSLDELSHQYPD-ENADGETPAESLRRL 283

Query: 296  AHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKN 355
              EG  ER     P++            + ++ +EL++I    +  YFL V   +K+A++
Sbjct: 284  VAEGAAERYPEGVPEKV-----------MRQIDYELELIHDKKYEPYFLTVHKLVKFARS 332

Query: 356  NDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDR 415
             ++ +  GRGS A S V + L ITD+DP  + LLF+RFL+ +R   PD DVDF  + R+ 
Sbjct: 333  VNI-LCQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDVDFEHERREE 391

Query: 416  VIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEK 475
            VI Y+   YG+          +  +++  R+VA    K++GL++ +   +   +      
Sbjct: 392  VIQYIYRTYGKEHAGLTAAVISYRSRSAGREVA----KAFGLSEDVQSALVSSIWGWGTS 447

Query: 476  AYEQEEILRDFLKG-DEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDE 534
             + +E+     L   D   R +   A  L    R   +H GG VI   +L +  PI    
Sbjct: 448  PFTEEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEVVPIMNTA 507

Query: 535  EGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLD 594
                 + ++DKDD++   ++K D L L  LT +    +++     +     + +  I  D
Sbjct: 508  MPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEP----ITLAEIYQD 563

Query: 595  DRKT-YELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDF 653
             R   Y+++ +A+T  VFQ+ESR    ++ +L+P  + DL+  VA+ RPGP+Q  MV  +
Sbjct: 564  HRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGNMVHPY 623

Query: 654  INRKHGRAE---LAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADML 710
            + R+  +     + YP  +     LK VL  T G+ L+QEQ MQIA   AG++   AD L
Sbjct: 624  LKRREAQRRGEAVVYPSPE-----LKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRL 678

Query: 711  RRAMGK-KKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLV 769
            RRAM   K+   +       +EG VAN+ + + A   F+ ++ F  YGF +SH+A++  +
Sbjct: 679  RRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASL 738

Query: 770  SYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNN 829
             Y +AWLKT+YP  F AA+L+A          LV + R   +R+   D+N SD+   +  
Sbjct: 739  VYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEG 798

Query: 830  DG----------------------RIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDF 867
            +G                       +  G   +KG+ +  ++A+V  R +G  ++ + D 
Sbjct: 799  EGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVARRGEG--YRSVHDL 856

Query: 868  CERIDLKR-VNKRTLDA-LVRSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKA 925
              R  L R V +R  DA   RS  LDR                   RA L      A+KA
Sbjct: 857  WLRSGLSRSVLERLADADAFRSIGLDR-------------------RAALW-----AVKA 892

Query: 926  AEQAAHTADSGHVDLFGSMFDAADVDVYANHRKVR--ELTLKERLKGEKDTLGLYLTGHP 983
             ++ +             +F+ A  D      KV   ++   E++  +  TL L L  HP
Sbjct: 893  LDEQSAVERL-------PLFEGAGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHP 945

Query: 984  IDEYETEIRRFARQRIVDLKPSRETQ--TIAGMIIALRVMKNKKGDKMG--FVTLDDRSG 1039
            +     +  R    R  DL  +   +  T+AG+++    ++ + G   G  F+T++D +G
Sbjct: 946  VSFMREDFSRRGILRSRDLAATATGRWVTVAGLVL----VRQRPGSANGVIFMTIEDETG 1001

Query: 1040 RIEASLFADAFMAAQSLLQTDAMVVVEGEVSN 1071
                 ++   F   +  +    +V V G + N
Sbjct: 1002 IANIIVWEKTFQKYRRQVMGSRLVKVRGRLQN 1033