Pairwise Alignments
Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440
Subject, 1169 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021
Score = 779 bits (2011), Expect = 0.0
Identities = 461/1123 (41%), Positives = 649/1123 (57%), Gaps = 64/1123 (5%)
Query: 5 FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
FVHLRVHS +SL++G + +K + + PA+ I D +N+ + ++F + A G++PI
Sbjct: 23 FVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQPI 82
Query: 65 CGADLWLAGADPE-----------APLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLV 113
G L + D L I +A GY L EL+SR + +G+ +
Sbjct: 83 IGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQQT 142
Query: 114 ILQREWIAPA-SEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRT 172
+ R W+A + GLIAL+ G + MAL +G AEA L+ + +F +R YVE+QR
Sbjct: 143 RISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQRH 202
Query: 173 NRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRC 232
D + + + LA +L PLVATN+ F +D+DAH+ + + + D R R
Sbjct: 203 GNY-DRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFRL 261
Query: 233 YSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDF------PTPNGM 286
D YLKS +EMA LF+DLP+A+ NT+E+A+RC+ ++ LP F P
Sbjct: 262 TPDH-YLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320
Query: 287 GIDDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIV 346
LR A EGLEERLA L P Y+E+ Y +RL FEL +I +M FPGYFLIV
Sbjct: 321 AEVAELRRQAEEGLEERLAKLG---MAPGYKEED--YRERLAFELGVIQRMKFPGYFLIV 375
Query: 347 MDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDV 406
DFIKWAK +D+PVGPGRGSGAGSLVAY L ITD+DP+ + LLFERFLNPERVSMPDFD+
Sbjct: 376 ADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDI 435
Query: 407 DFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP 466
DFC D R+ VI YV + YGR V+QIITFG++ A+A +RDV RV YG D++ K++P
Sbjct: 436 DFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVP 495
Query: 467 FEVG--MTLEKAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKL 524
L KA E+E LR+ + + + D+A K+EG+ R HA G+VI L
Sbjct: 496 NNPANPTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPL 555
Query: 525 TDFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLP 584
+ P+ D VTQF+ VE AGLVKFDFLGL+TLT++K A++ + +
Sbjct: 556 SQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGKRGI----- 610
Query: 585 DLNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGP 644
+++ IPLDD KTYE L + ET VFQ+ES GM++ + ++PDC+ED+IALVAL+RPGP
Sbjct: 611 HIDLASIPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGP 670
Query: 645 LQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTL 704
+++ + + RKHG E+ H Y +L T G+I+YQEQVMQIAQV++GY+L
Sbjct: 671 MEN--IPVYNARKHGEEEIESIHPKIDY-----LLKETQGVIVYQEQVMQIAQVLSGYSL 723
Query: 705 GGADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSA 764
G AD+LRRAMGKK EM KQR F++G V N + A IFDL+ KFA YGFNKSH+A
Sbjct: 724 GEADLLRRAMGKKIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAA 783
Query: 765 AYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFK 824
AY +VSYQTA++K HYP F+AA ++ DM NTDK+ ++ + +++ AP V S
Sbjct: 784 AYAIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRH 843
Query: 825 FTVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDAL 884
F D RI Y L A+KGVGE V+ IV R PF L DFC RID K +N+R ++L
Sbjct: 844 FE-TGDNRIYYSLAALKGVGESAVDHIVAVRGD-RPFASLEDFCLRIDPKLLNRRVFESL 901
Query: 885 VRSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSM 944
+ +GA D G +RA L+ L + A++A SG D+FG+
Sbjct: 902 IAAGAFDCFG---------------YDRAELIGGLDRILGFAQRAQENKVSGQSDMFGA- 945
Query: 945 FDAADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVD--- 1001
AA E+L E LG YL+ HP+D Y + + Q D
Sbjct: 946 -GAATGPEKIALPPYTPWLASEKLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSA 1004
Query: 1002 -LKPSRETQTIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTD 1060
+K +AG + + + K + G+KMG V D SG+ EA LF++ + LL+
Sbjct: 1005 AVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPG 1064
Query: 1061 AMVVVEGEVSNDDFSGGLRLRVKQVMTMEDARTKLAESLRLKV 1103
+V+ V ++ G+ LR++ + ++E+ ++ ++LR+ V
Sbjct: 1065 KSLVM--TVDAEERPEGIGLRIRTLRSLEEESLQMQKALRVYV 1105