Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1170 a.a., DNA polymerase III, alpha subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  791 bits (2044), Expect = 0.0
 Identities = 467/1119 (41%), Positives = 652/1119 (58%), Gaps = 56/1119 (5%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            FVHLRVH+  S+ +G +++K L K    M MPAVAITD  N+   ++   TA   G++PI
Sbjct: 20   FVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDMGVQPI 79

Query: 65   CGADLWL-----------AGADPEAP-LSRICFLAMDPKGYRNLTELISRGWTDGQRNGL 112
             G  + +           AG D  AP    +  LA +  GY NL +++SR + +G  +  
Sbjct: 80   IGCQIAVRNEEVRERGFGAGRDLRAPDPDAVVLLAKNASGYANLMKIVSRSFIEGDGSEA 139

Query: 113  VILQREWIAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRT 172
              ++   I   ++GLI L+ G  G +G  L  GR+DEA A+L      F +R YVE+QR 
Sbjct: 140  PQVRLADIEALNDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRVYVEIQRH 199

Query: 173  NRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRC 232
              A ++      + LA      LVATN+  +  +A F+AH+  +C+ +   + D  R R 
Sbjct: 200  GMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIGDETRRRL 259

Query: 233  YSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYL 292
             + + Y K A EM  LF+DLP+A+ NT+ IAKRC +  +  K  LP  P   G    + L
Sbjct: 260  -TPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVKGRTEAEAL 318

Query: 293  RHVAHEGLEERLAVLWPKETTPNYE--EKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFI 350
              +A EGL++RL     +E     E  E  + Y +RL +ELD+II+MGFPGYFLIV DFI
Sbjct: 319  CAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFPGYFLIVADFI 378

Query: 351  KWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCM 410
            +WAK+ D+PVGPGRGSGAGS VA+ L ITDLDPL + LLFERFLNPERVSMPDFD+DFC 
Sbjct: 379  QWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVSMPDFDIDFCQ 438

Query: 411  DGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE-- 468
            D R+ VI YV   YG   V+QIITFG + A+AV+R V RV     G  D++ KM+P    
Sbjct: 439  DRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKICKMVPNNPA 498

Query: 469  VGMTLEKAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528
              +TL++A E E  LRD  K DE    + D+ +KLEG+      HA GVVI    L +  
Sbjct: 499  APVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVIGDRPLDNLV 558

Query: 529  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNI 588
             +  D      VTQF+   VE AGLVKFDFLGL+TLT+++ A+  I +     +L DL  
Sbjct: 559  ALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAKRGITVDLLDL-- 616

Query: 589  DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648
               PLDDR++Y++L + ET+ VFQLES GM+++++ +KPD LED++A+VAL+RPGP+ + 
Sbjct: 617  ---PLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPGPMDN- 672

Query: 649  MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708
             +  +I RK G  E+ Y H     + L+P+L  TYGI++YQEQVMQ AQ+MAGY+LGGAD
Sbjct: 673  -IPSYIKRKKGEEEVVYLH-----DSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGAD 726

Query: 709  MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768
            +LRRAMGKK   EM  QR  F+EG          A  +FD + KFAGYGFNKSH+AAYGL
Sbjct: 727  LLRRAMGKKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGL 786

Query: 769  VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828
            V+YQTA+LK +YP  FMAA ++ DMHNTDK+ V   E+R + + L  PDVN S   F V 
Sbjct: 787  VAYQTAYLKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGV- 845

Query: 829  NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888
             DG + Y LGA+K VG   ++A+V  R   GPFKDL DF  R+D K +NKR L+ L+++G
Sbjct: 846  EDGAVRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKAG 905

Query: 889  ALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAA 948
            ALD               ++D +RA LL+     ++ A+ AA    S    LFG     A
Sbjct: 906  ALD---------------SLDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGA--GA 948

Query: 949  DVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRET 1008
              +     R     T+ E L  E+D +G YL+ HP+D Y   + R     I ++ P    
Sbjct: 949  TSEPPMKFRACAAWTITETLAHERDAMGFYLSAHPLDIYGDSLERLDVVPI-EMLPGHLR 1007

Query: 1009 QTIAGMII------ALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAM 1062
               +G +       A +    K G +  FV L D +G  E  +F++   A++ LL +   
Sbjct: 1008 GGGSGAVKLAVTPGARKERIGKSGSRYAFVELSDATGSCETMVFSEVLGASRELLDSGRP 1067

Query: 1063 VVVEGEVSNDDFSGGLRLRVKQVMTMEDARTKLAESLRL 1101
            ++V  +   +     +RL  + +  ++DA  + A  +++
Sbjct: 1068 LLVRADARLE--GEEVRLLAQAIELLDDAVARAARRIKV 1104