Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1127 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

 Score =  318 bits (814), Expect = 2e-90
 Identities = 238/780 (30%), Positives = 375/780 (48%), Gaps = 45/780 (5%)

Query: 86  LAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPASEGLIALSAGKEGDIGMALLAG 145
           L  D   Y+ L  L++ G    ++ G  +L  E +  A +G+I ++  KE          
Sbjct: 141 LPCDRSAYKRLARLLTLGKRRAEK-GQCLLYAEDMIDACKGMILIALPKE---------- 189

Query: 146 RQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVHAAVALADKLGAPLVATNDVRFIK 205
               A + +Q     FP   ++         D+ Y+ A   LA    AP+VA  DV   +
Sbjct: 190 TLSNAVSDIQKIGRQFPNHVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHR 249

Query: 206 QADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKR 265
                  +   C+ E   +DD       + ++ LK+  +MA +F D P A+  T EIA R
Sbjct: 250 ANRRQLADVLTCMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANR 309

Query: 266 CNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLD 325
           CN  +    Y  P      G    D L  +A EGL+ R          P+    R + L 
Sbjct: 310 CNFDLSELSYEYPH-EEAEGETPQDRLERLAREGLKRRY---------PDGPPDRAIKL- 358

Query: 326 RLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLA 385
            ++ EL  +  + FP YFL V D +++A++  + +  GRGS A S++ Y+L ITD+ P  
Sbjct: 359 -MEKELSAVKDLEFPAYFLTVHDIVQFARSKGI-LCQGRGSAANSILCYLLGITDVSPDM 416

Query: 386 YDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVR 445
             ++FERF++  R   PD DVDF  + R+ VI ++ + YGR+      T      +A +R
Sbjct: 417 IAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATVIHFRTRAAIR 476

Query: 446 DVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILRDFLKGDEDAREIWDMAL--KL 503
           +V +V G S  +   LS  I       +       E +R+     ED R +  + L  ++
Sbjct: 477 EVGKVMGLSQDVTAGLSGQI-----WGMSNGSVDLERIRELGLNLEDRRLMQTIRLIGEI 531

Query: 504 EGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRT 563
            G  R   +H GG VI   +L + +PI         V  +DKDD++A  ++K D L L  
Sbjct: 532 IGFPRHLSQHVGGFVITSGRLDELAPIENAAMENRTVICWDKDDIDALRILKVDILALGM 591

Query: 564 LTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIK 623
           LT I+ A  ++   Q  +N+   +I  IP  D  TY++L  A+   VFQ+ESR     + 
Sbjct: 592 LTCIRKAFALM---QQHENITH-SIATIPQKDEATYDMLCAADAVGVFQVESRAQMNFLP 647

Query: 624 KLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTY 683
           +++P    DL+  VA+ RPGP+Q  MV  +I R++G  +      D     L+ V   T 
Sbjct: 648 RMRPREFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEK-----PDPFGPQLEQVTRRTK 702

Query: 684 GIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEMAKQRGGFIEGCVANNIDADL 742
           G+ L+QEQ +QIA V AG++   AD LRR++   ++   ++K R  FI G + N    ++
Sbjct: 703 GVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRMGTISKYRDKFIAGMLKNKYSREI 762

Query: 743 AGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVL 802
           A   F  +E FA YGF +SH+AA+ +++Y +AWLK H+PA F  A+L++          +
Sbjct: 763 AERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQI 822

Query: 803 VEEVRSMKLRLDAPDVNFSDFKFTVNN--DGRIVYGLG--AIKGVGEGPVEAIVEARAQG 858
           V +VR   + +    VN S +  ++    DG +   LG   IKG  E     I+ AR  G
Sbjct: 823 VRDVRDHGIEVRPICVNQSQWDNSLERRPDGTLALRLGFRQIKGFKEDDTGWIIAARGNG 882