Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1110 a.a., DNA-directed DNA polymerase III PolC from Dechlorosoma suillum PS

 Score =  334 bits (856), Expect = 3e-95
 Identities = 295/1087 (27%), Positives = 482/1087 (44%), Gaps = 93/1087 (8%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            +  L   S FS + G    + L +    +   A+A+TD+ +    V+ +  A  AG+K I
Sbjct: 15   YAELHCLSNFSFLRGASHPEELVQRAVELGYGALAVTDECSFAGSVRAHVAAKAAGLKLI 74

Query: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPAS 124
             G ++ LA         ++  LA + +GY NL+ LI+      ++    + + +      
Sbjct: 75   HGTEIVLADG------LKLVLLAQNREGYGNLSALITLARRRAEKGAYRLTRGDLEGFGP 128

Query: 125  EGLIALSAGKEGDIGMALLAGRQDEAEALLQD--WMGM-FPERFYVEVQRTNRARDEEYV 181
             G +        D     + G Q ++     D  W+   FP R ++ V+      D   +
Sbjct: 129  SGALP-------DCLALWVPGPQFDSPPDPADGRWLAQRFPGRSWLAVELHAGPDDRGRL 181

Query: 182  HAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKS 241
                 LA   G PL+A  DV    +A     +    +    T+         + +++L+ 
Sbjct: 182  EQLQQLAADCGLPLLAAGDVHMHSRARRPLQDVLTALRLNTTVFAAGHALHPNGERHLRP 241

Query: 242  AEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLE 301
               +A L+   P+ +A T+ +A RC   +   +Y  P+   P+G+    YLR     GL 
Sbjct: 242  RLRLARLYP--PELLAETLAVAARCTFSLDELRYEYPEEVVPHGLTPAAYLRQEVEAGL- 298

Query: 302  ERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVG 361
               AV +P        EK +    ++++EL +I ++ +  YFL V D +++A++ ++ + 
Sbjct: 299  ---AVRYPD----GVPEKARA---QVEYELGLIARLQYEAYFLTVYDIVRFARSREI-LC 347

Query: 362  PGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVA 421
             GRGS A S V Y L IT++DP   +LLFERF++ ER   PD DVDF    R+ VI Y+ 
Sbjct: 348  QGRGSAANSAVCYALGITEVDPAKSELLFERFISAERGEPPDIDVDFEHQRREEVIQYLY 407

Query: 422  EAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEE 481
              YGR   +      T   +  +RD  R  G      D L+  + +      ++  E  E
Sbjct: 408  AKYGRERAALTGALITYRTRGALRDAGRALGFGREQIDALAGTLAW-----WDRQDELPE 462

Query: 482  ILRDFLKGDEDAREIWDMALK--LEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGL 539
             LR      E  R    +A+   L G  R   +H GG VI+   L+   PI         
Sbjct: 463  RLRAVGLDPESPRVAKWLAVSRALRGFPRHLSQHVGGFVISRGPLSRLVPIENAAMAERS 522

Query: 540  VTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTY 599
            V Q+DKDD++A GL+K D L L  L+ I+ A++++     K     + +  IP + +  Y
Sbjct: 523  VIQWDKDDIDALGLMKVDVLALGMLSAIRRALDMLGARDGK----PVRLQDIPRESKAVY 578

Query: 600  ELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHG 659
            ++L + ++  +FQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  MV  ++ R+HG
Sbjct: 579  DMLCRGDSLGIFQVESRAQMAMLPRLKPRQFYDLVVQVAIVRPGPIQGDMVHPYLKRRHG 638

Query: 660  RAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KK 718
              ++     +     +  VL  TYG+ ++QEQVMQ+A V AG+T G AD LRRAM   K+
Sbjct: 639  EEKI-----EKISPAVDKVLQRTYGVPIFQEQVMQLAVVAAGFTPGEADQLRRAMAAWKR 693

Query: 719  PEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKT 778
               +       I G     +    A  IF+ ++ F  YGF +SH+A++ ++ Y +AWLK 
Sbjct: 694  KGGLEPFEQKLIRGMQERGLPESFARRIFEQIKGFGDYGFPESHAASFAILVYFSAWLKR 753

Query: 779  HYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTV---------NN 829
              PA F+  +L+A          LV++ +   + +  PDV  S ++  +           
Sbjct: 754  FEPAAFLCGLLNAHPMGFYAPAQLVQDAQRHGVTVLPPDVTHSAWESLLVELLPGHPPAR 813

Query: 830  DGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKR------VNKRTLDA 883
               +  GL  I G  +   E IV AR Q GPF+ + D   R  L+R           L A
Sbjct: 814  PRTVRLGLREIAGFNQAAAERIVAAR-QEGPFQSVADLAARAGLQRPELERLAAANALQA 872

Query: 884  LV--------RSGALDRLGPHFHDEIKAYHANIDINRAT--------LLSALGEAIKAAE 927
            L          S A++  G   H   ++ H      R            S++ +A  A  
Sbjct: 873  LAGHRRAAAWESAAVENTGQPRHHGSRSGHGQEAEQRKERGGAQAPGRRSSVSDATNATG 932

Query: 928  QAAHTADS-----GHVDLFGSMFDAADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGH 982
            ++ +  D        + + G +F A    V A    +   T  E L  +  TLGL L  H
Sbjct: 933  RSKNGMDERDERVHSLPIQGDLFAALPPPVEA-PPPLPTPTEGEDLVADYATLGLTLGRH 991

Query: 983  PIDEYETEIR--RFARQRIVDLKPSRETQTIAGMIIALRVMKNKKGDKMG--FVTLDDRS 1038
            P+      +   RF     +   P R+    AG++      + + G   G  FVT++D +
Sbjct: 992  PLALLRDRLTAGRFITAAELRAAPDRKLARAAGIV----THRQRPGTASGIVFVTMEDET 1047

Query: 1039 GRIEASL 1045
            G I   L
Sbjct: 1048 GPINVIL 1054