Pairwise Alignments

Query, 813 a.a., Phage tail tape meausure protein, lambda family from Pseudomonas putida KT2440

Subject, 914 a.a., prophage LambdaSo, tail length tape meausure protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 95.5 bits (236), Expect = 1e-23
 Identities = 195/934 (20%), Positives = 350/934 (37%), Gaps = 149/934 (15%)

Query: 1   MASRSLGTLTLDVIAQVGGFVAGMDKAERSSEKWRKQVEKNAKAVGTAVGA--GLATGIT 58
           MA++SLGTLTL+++A+ G FV G  KAER+  K      K    +   +G    L    +
Sbjct: 1   MANKSLGTLTLNMVAETGSFVEGQTKAERALAKTEAAAAKQKAELNRLLGQIDPLVAEYS 60

Query: 59  AITAM--------TVSAINSASEITNLASVANVSTTDFQKLAVGAKTVGVEQDKLADILK 110
            +  M           ++  A   T    +A +  T+  K  V     G+   ++A   +
Sbjct: 61  KLDKMEQQLRRHRESGSLQQAEYDTYSKKIAQM-RTEVGKAGVEYDKTGMSAKQMAFATR 119

Query: 111 DVNDKVGDF---LNTGGGGMADFFEQVAPKVGVTADQFRNLS-GSQALGLYVS------T 160
            +  +  D    L  G   M  F +Q     G   D F  +   ++A+G Y+       T
Sbjct: 120 GLPAQFTDIAVSLQAGQNPMTVFLQQ----GGQLKDMFGGVGPAAKAMGGYIMGLINPFT 175

Query: 161 LEKAKVSQSDMTFYLEAIASDATALLPLLRNNSEG--FKRFGDAAAAAGSIMDEKTIRAA 218
           +  +      + +Y  +I +D      +L  NS G    +  +AA    +I   +   +A
Sbjct: 176 VAASAAGVMALAYYQGSIEADRLRNALILTGNSAGTTTDQLMEAAKRIDAISGTQRQASA 235

Query: 219 QELKAANW---------LVEQSISGLGNQITSAMLPTLANFATRLSDTTING-------- 261
              + AN          LV  +   + N    A+  T+A F  +L+D  +          
Sbjct: 236 ALAEVANTGKFTASQIELVGLAAVKMENTTGKAVADTVAEF-VKLADDPVKAAEELNKKF 294

Query: 262 -----------VLAKRVSDDLAASFRALGKFAVGTVAGIHLLGVGLKTLSDVDNAMVGGD 310
                      V  K      AA+  A   ++         +   L ++     A+  G 
Sbjct: 295 NFLSASTYEQIVALKEAGKSTAAAELAFSAYSNAIDQRTKEITGNLGSIEKAWKAIKSGA 354

Query: 311 DAKWYDRYLPPVRIYNAFKNVDAIGKTISGAKAQMDGLATGYGSLIASFDEKPGQGSTNQ 370
              W D+ L   R     +   A+ K I   + +      GYG  +A  + K  +   + 
Sbjct: 355 VESW-DQILNIGRADTLEQQYAALSKRIEDLRPKTKQGEWGYG--LAREELKALEAERDS 411

Query: 371 IKELADLLARLREGQAGSFTALTTD----QQAAAKAAEAA------AKKLLGQFDTAEEG 420
           +  L     R R  +      L  D    Q+A AK  E          K + +++   E 
Sbjct: 412 VMALMK-TERDRSAEQAKRAKLNQDSIEAQRAIAKVTEETLTNEQKRNKAIKEYNDNIEK 470

Query: 421 YKR---QIALINTETDKRKEAT------EVAKLQFELESGNLAGLSAKQQERLKGLAAEL 471
            ++     AL+N +  KR  A+      + AK               + +E   GL  +L
Sbjct: 471 VRKADPNSALLNADKIKRDLASIEEKFKDSAKTTKAFADDAATSYLMRLRETQAGLQGQL 530

Query: 472 DQLKKLKQAKED----DKEVAGFD--------------------ASVKRQLDIDQ---RA 504
           D+  KL Q++++    ++++A                       A +++ + +D+   + 
Sbjct: 531 DRNTKLTQSQKELLQFEQQIADIKNKDVLTAQQKSLLAEQSVIRAQLEKNVALDEELKKR 590

Query: 505 LDAPLLNAYST-----------------------DEMKQRVLDLLAIEQDYQDQLEDLRQ 541
            +A  L +YS                        D+ +QR+ D  +IE+D +        
Sbjct: 591 NEALRLQSYSANLAANLAAEQQRNADKLASFGLGDKAQQRLGDRQSIERDIERAQGKALS 650

Query: 542 RHEAGDVSDSVYERETEILSDALEKRRAMQEKYYQDVDAMQQNGTAGFISGFATQAEAAM 601
            + AG  +D  Y+ +  +L   L  R A Q +YY  +DA Q + T G  S      +AA 
Sbjct: 651 DNLAGRTTDEEYQAQLVMLKQNLSDRLAAQNEYYIALDAKQADWTNGARSSMQNYIDAAA 710

Query: 602 DLYSNMQSVGSAAFSSLTDMLTEWAETGKLNAKDFAATFIQSIGHSLLAYAAAQVAMAGL 661
           D+    + +  +AF  +TD LT++  TGK +      + +  I     A  A Q A+AG+
Sbjct: 711 DMAGQTEKLFDSAFGGMTDALTDFVTTGKADFAWLTKSILADI-----AKIAMQKAIAGI 765

Query: 662 NAFTAMIGVPFVGPAIAPGAAIAAAAAAGVLMTGVGSALSGQAHGGMENIPREGTWLLDG 721
              +++ G    G A+  G +      AG      G    G+      ++ R G   +  
Sbjct: 766 --ASSIFGGFSEGGAV--GYSSGGYTGAGGKYEPAGIVHRGEVVWSQRDVARAGG--VAT 819

Query: 722 GERVLSPAQNRDLTGYLQRA--NSVDATSKPGGGAMNVEVH----NYAPAQVD---VQQD 772
            E +    +  D  G +  A  N V A++  G G ++VEV+      A    D   + Q 
Sbjct: 820 VEAMRKGHKGYDNGGIVGGAAYNGVPASATAGAGVVHVEVNIDQSGNATTTADTPALSQF 879

Query: 773 GDRMKVFIREAKKQIAGDLARGNGDVSKALSQGW 806
           G  +  F+ +  +Q+  +  + NG + + ++ G+
Sbjct: 880 GSELGKFVEQKYRQLLANDLKPNGQIGRTMAGGY 913