Pairwise Alignments

Query, 383 a.a., Succinyl-diaminopimelate desuccinylase from Pseudomonas putida KT2440

Subject, 384 a.a., succinyl-diaminopimelate desuccinylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  462 bits (1189), Expect = e-135
 Identities = 231/378 (61%), Positives = 275/378 (72%), Gaps = 2/378 (0%)

Query: 5   AELSPTLQLACDLIRRPSVTPVDADCQAQMMNRLGAVGFQLEPMRIEDVDNFWATHGSQD 64
           ++  P  +L   LI RPSVTP+D  CQ  M  RL A+GF +E M  ED  N WA  G+  
Sbjct: 8   SQTGPVTELTKALIARPSVTPLDEGCQTLMAERLAAIGFNIEAMVFEDTTNMWARRGNT- 66

Query: 65  GPVLCFAGHTDVVPTGPVQQWQHEPFEALIDADGMLCGRGAADMKGSLASMVIASERFVQ 124
           GPV CFAGHTDVVPTG + +W   PFE  I  DG L GRGAADMKGSLA+MV+A+ERFV 
Sbjct: 67  GPVFCFAGHTDVVPTGDLSRWHTPPFEPTI-IDGYLYGRGAADMKGSLAAMVVATERFVA 125

Query: 125 DYPNHRGKVAFLITSDEEGPAHHGTKAVVERLKARNERLDWCIVGEPSSTTLLGDVVKNG 184
            +PNH G +AFLITSDEEGP  +GT  V++ L+ARNE++ W +VGEPSST  LGDVVKNG
Sbjct: 126 KHPNHPGSIAFLITSDEEGPFINGTTRVIDTLEARNEKITWALVGEPSSTLKLGDVVKNG 185

Query: 185 RRGSLGAKLTIRGKQGHVAYPHLARNPIHLAAPALAELAAEHWDEGNAFFPPTSFQISNL 244
           RRGSL A LT++G QGHVAYPHLA NPIH AAP LAEL+  HWD GNAFFPPTS QI+N+
Sbjct: 186 RRGSLTANLTVKGVQGHVAYPHLADNPIHKAAPFLAELSQTHWDNGNAFFPPTSMQIANI 245

Query: 245 NSGTGATNVVPGELTALFNFRFSTESTVEGLQARVSAILDKHELDWSVDWALSGLPFLTE 304
           N GTGA+NV+PG L  +FNFR+STE T E L  RV  +L  HELD+ + W  +GLPFLT 
Sbjct: 246 NGGTGASNVIPGALEVMFNFRYSTEVTAEILIERVETLLTAHELDYDIRWTFNGLPFLTG 305

Query: 305 PGELLDAVAASIKGVTGRDTQPSTSGGTSDGRFIATMGTQVVELGPVNATIHQVDERILA 364
            G LLDA   +I+ VTG DT P T+GGTSDGRFIA  G +V+ELGPVNATIH+V+E +  
Sbjct: 306 EGPLLDATRHAIRQVTGYDTDPQTTGGTSDGRFIAPTGAKVLELGPVNATIHKVNECVKV 365

Query: 365 SDLDLLTEIYYQTLVRLL 382
            DL+ L   Y   L +LL
Sbjct: 366 DDLEQLALCYEVILEQLL 383