Pairwise Alignments

Query, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  110 bits (276), Expect = 5e-29
 Identities = 111/383 (28%), Positives = 162/383 (42%), Gaps = 44/383 (11%)

Query: 1   MLRHALSIALPAAAALLLAACG-------QEAAPPAAPRPALVVQ-----PQPAEAAADS 48
           MLR  + I L     ++L   G       Q+    +AP+P + V       QP +A   +
Sbjct: 1   MLRRRMLIMLGVVLLVVLLLAGYKAFSIYQQIQMFSAPKPPVSVAVAKAIEQPWQARLPT 60

Query: 49  YPGEVRARFEPELAFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAA 108
             G ++A    +L+  I G V K   + GQ+VKA QPL +LD        E   A L  A
Sbjct: 61  V-GSLKALQGVDLSLEIAGTVQKVQFQSGQKVKAGQPLLQLDS-------EVESALLETA 112

Query: 109 EANLALVRAERDRYQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAV 168
           EA+L L + +  R ++L+  Q +S  ++D      +   A + Q KA        A+  +
Sbjct: 113 EADLGLAQLDFGRGRQLVGSQAISKGEFDRLSAQLKKNQATVNQLKASL------AKKQI 166

Query: 169 LRAPQAGVIAKRQVEVGQVVAAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELW 228
           L AP +G I  RQV+VG  +A+G  + TL       V   +PEQ   R AV QPV+V + 
Sbjct: 167 L-APFSGTIGIRQVDVGDYLASGTVIATLQDLSSLYVDFYVPEQTVPRLAVAQPVNVSVS 225

Query: 229 SHPQARFQGRIRELSPAADPRSRTFAARIAFTTAAVPAELGQSARV-FIAKDGLIPLAVP 287
           ++P   F G I  ++P  +  +R    R            G  A +  I  D    + VP
Sbjct: 226 AYPGQTFVGTISAINPKVEDSTRNVLVRATLANPDGKLLPGMFANLQVILPDVAAGIVVP 285

Query: 288 LSAVT----------AENGQAYVWRVNKESR------LERATVRLGAYGSDSVPVLEGLD 331
            SAVT              +A    V K+ +       ER  V  G      V V +G+ 
Sbjct: 286 ESAVTYTLYGNSMYVVAQKKAADGTVEKDDKGQPVLIAERRFVETGERRDGQVLVTKGVQ 345

Query: 332 PGDWVVAAGGHVLREGQEVRPVD 354
            GD VV AG   L  G  +   D
Sbjct: 346 SGDQVVIAGQIKLDNGTPIAVSD 368