Pairwise Alignments

Query, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  104 bits (259), Expect = 4e-27
 Identities = 84/298 (28%), Positives = 133/298 (44%), Gaps = 18/298 (6%)

Query: 61  LAFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERD 120
           L     G + +   E G +V  DQPL  LD           RA L + EA L   +A+ +
Sbjct: 72  LTTETAGVIDQITFESGTQVAKDQPLVLLDSA-------VERANLKSTEARLPAAKAKYE 124

Query: 121 RYQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKR 180
           RY+ L  +  +S   YD AE  Y A  A ++  KA   +A  +     ++AP AGVI  R
Sbjct: 125 RYKGLFAKGSISKESYDEAEASYYALSADIESLKAT--IARRE-----IKAPFAGVIGIR 177

Query: 181 QVEVGQVVAAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIR 240
            V +GQ +  G  +  L       +   +P++  +R ++ Q V + + ++PQ  F+G I 
Sbjct: 178 NVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSIS 237

Query: 241 ELSPAADPRSRTFAARIAFTTAAVPAELGQSARVFIAKDGL-IPLAVPLSAVTAE---NG 296
            + PA   +S     +     +      G  AR  I    L   + +P +A+T     + 
Sbjct: 238 AIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDN 297

Query: 297 QAYVWRVNKESRLERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVRPVD 354
              V   N E R+++  V++G        +LEG+ PGD VV  G   L  G +VR V+
Sbjct: 298 VYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVE 355