Pairwise Alignments

Query, 303 a.a., polyamine ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 306 a.a., Putrescine transport system permease protein PotH (TC 3.A.1.11.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  112 bits (280), Expect = 1e-29
 Identities = 71/252 (28%), Positives = 136/252 (53%), Gaps = 16/252 (6%)

Query: 47  YTFDDFTMAVTPDLTLGNFAALFNPSNF-DIILRTLGMAVAVSLASAVLAFPIAYYMARY 105
           Y++ D  + V   L L N+A L     +    L +L MA+  ++   ++ +P+AY +A  
Sbjct: 59  YSYVDQKLQVL--LNLANYAMLSEDELYIAAYLGSLKMALISTVLCLLIGYPMAYGIANA 116

Query: 106 TSGKTKAFFYIAVMMPMWASYIVKTYAWTLLLAKGGVAQWFVQQLHLDGLLQAVLAVPGV 165
              + +    + +MMP W + +++ YAW  +L+  G+   F+  +   G +   L +   
Sbjct: 117 RK-EMQTVLVLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLLSM---GFINEPLQI--- 169

Query: 166 GGSTLSTSHLGRFLVFVYIWLPFMILPIQASLERLPPSLLQASADLGARPGQTFVQVILP 225
                  ++L  ++  VY +LPFMILP+ A+L +  PSLL+A++DLG+    +F ++ +P
Sbjct: 170 -----LNTNLAVYIGVVYSYLPFMILPLYANLVKHDPSLLEAASDLGSSTFNSFWKITVP 224

Query: 226 LSIPGIAAGSIFTFSLTLGDFIVPQLV-GPPGYFIGSMVYAQQGAIGNMPMAAAFTLVPI 284
           LS  GI AG +  F   +G+F++P+L+ GP    IG +++ +     + P+A+A  +V +
Sbjct: 225 LSKNGIVAGCMLVFIPVVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVML 284

Query: 285 VLIAVYLAIVKR 296
            ++ V + +  R
Sbjct: 285 AILIVPIILFNR 296