Pairwise Alignments

Query, 268 a.a., polyamine ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 275 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  150 bits (378), Expect = 4e-41
 Identities = 88/258 (34%), Positives = 149/258 (57%), Gaps = 11/258 (4%)

Query: 12  LAAWGGLLFLHFPILIIFLYAFNTEDAAFSFPPKGFTLKWIDVAFTRPDVLEAIKLSLQV 71
           L  WGG+ FL+ P+ I+  Y+FN       +   GF+ KW    F    +L+A+  SL+V
Sbjct: 13  LMLWGGMFFLYAPMFILVFYSFNESKLVTVWG--GFSAKWYGELFRDDQILDAVATSLKV 70

Query: 72  ACLATLIALVLGTLASAALYRRS-FFGKESISLVLILPIALPGIITGIALLSAFKTLG-- 128
           A  A+ +A++LGT+A+  + R +  +GK ++S ++  P+ +P +ITG++LL  F  +   
Sbjct: 71  AFFASTMAVILGTMAAFVMTRFARSWGKMTLSNMITAPLVMPEVITGLSLLLLFVHMADL 130

Query: 129 ----IEPGVFTIVVGHATFCVVIVYNNVIARLRRTSQSLIEASMDLGADGWQTFRYIVLP 184
                E G+ T+ + H+TFC   V   V +RLR    S+ EA+ DLGA   +TF +I +P
Sbjct: 131 LGWPAERGMLTVWIAHSTFCAAYVAVVVSSRLRELDMSIEEAAQDLGATPLKTFFHITVP 190

Query: 185 NLGSALLAGGMLAFALSFDEIIVTTFTAG-HERTLPIWLLNQLSRPRDVPVTNVVAMLVM 243
            +  AL+AG +L+F+LS D++++ +F +G    TLP+ + + + R    P  N +A L++
Sbjct: 191 MISPALIAGWLLSFSLSLDDLVIASFASGPGATTLPMVVFSSV-RMGVSPKINALATLII 249

Query: 244 LVTMLPILGAYYLTRGGD 261
           L+  L    ++YL R  D
Sbjct: 250 LIVSLIAFISWYLARRAD 267