Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

Subject, 322 a.a., Site-specific tyrosine recombinase from Xanthomonas campestris pv. campestris strain 8004

 Score =  176 bits (446), Expect = 6e-49
 Identities = 104/290 (35%), Positives = 161/290 (55%), Gaps = 7/290 (2%)

Query: 9   IDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQ-EHSVSLPDAGRDLILDHLAWRLDQG 67
           ++ FL  L +E+ +S +T  +YR DLA   GW   + S  +       +   +     +G
Sbjct: 31  VEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEHRRG 90

Query: 68  YKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPD 127
             P+S  R LS  R ++ +LL+   +A  P   +  P+  + LP+ L   +   L++ P 
Sbjct: 91  LSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVEVPT 150

Query: 128 LGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAV 187
               +G RDRA+LE+ Y+ GLR++EL +L    ++L  G++ V+GKG K+RLVP+G  AV
Sbjct: 151 -DAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGSHAV 209

Query: 188 VWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247
             L  +QRD       G     +FP + G  ++++    RIK  A   G+ K + PH LR
Sbjct: 210 AALRAWQRDS-----GGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHMLR 264

Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297
           H+FA+H+L    DLR VQ LLGHSD++TTQIYTH+    L +++   HPR
Sbjct: 265 HSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPR 314