Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  355 bits (910), Expect = e-103
 Identities = 178/294 (60%), Positives = 223/294 (75%), Gaps = 1/294 (0%)

Query: 5   DHPLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRL 64
           D  L++QFLD +W E+GL++NT  SYR+DL+    W+ ++   L       + ++ +W  
Sbjct: 8   DQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLS 67

Query: 65  DQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQ 124
           +Q YKP S AR LS +R  F+YL REK+ A DP+  +  P+L   LPK LSEA VEALL 
Sbjct: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127

Query: 125 APDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGE 184
           APD    +  RD+AMLE+LYA GLRVTELVSLT++ ++LRQGV+RVMGKG KERLVPMGE
Sbjct: 128 APDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGE 187

Query: 185 EAVVWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGID-KPLSP 243
            A+ W+E + + GR+ LL  + SD++FPS RG+QMTRQTFWHRIKH+A +AGID + LSP
Sbjct: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSP 247

Query: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297
           H LRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVA  RL+QLH +HHPR
Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301