Pairwise Alignments

Query, 680 a.a., TonB-dependent receptor from Pseudomonas putida KT2440

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 97.8 bits (242), Expect = 2e-24
 Identities = 178/724 (24%), Positives = 293/724 (40%), Gaps = 146/724 (20%)

Query: 6   LRLSPLAVALW--LAASPSQAVELEPQ-----VITANPLGN--RQLAAPSTVLEGDNLLQ 56
           ++LSP++ A+   LAA  + A E EP      V+TAN +     ++A    VLEG+ L +
Sbjct: 1   MKLSPVSAAVLSVLAAGFAHA-ETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEK 59

Query: 57  QQHGSLGETLNKQPGVASTWFGPGASRP---VIRGLDGDRIRILRNGV------GALDAS 107
           Q    L + LN++PGV+ T    GA RP    IRG+ G+RI I+R+G+      GA D +
Sbjct: 60  QGKTELYDALNQEPGVSVTG---GAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADIN 116

Query: 108 SLSYDHAVPLDPVTVERVEIVRGPAALLYGGNAIGGVVNTFDNRIPDSPI--EGIHGAGE 165
                +   L    V+++++V+G ++ LYG  AIGGVV   +++ P+  +     +    
Sbjct: 117 DKYGRNTFSLS--NVKQIQVVKGASSTLYGSGAIGGVV-IIESKAPEDYLYHRDYYVDAA 173

Query: 166 LRYGGADT--TRSSAGKLEAGDGAFALHLD----ANSRQFN----DLRIPGY--ARSAKV 213
           L Y G       + A  +  GDG   L +D      +R FN    +  + GY    S   
Sbjct: 174 LTYSGISNRYQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSHHY 233

Query: 214 RDADEPGSKHRLENSDG----RQDGGAIGGAYHWDHGYAGLSYSRYDSNYGSVAESGVRL 269
              D    K  LE  D     R+   +I     WD     +S+  Y  +   +A  G   
Sbjct: 234 WLNDALRLKTHLEYFDDYAKRREGTSSIQKDDKWDL----VSFYEYQRSQTRLASVGA-- 287

Query: 270 DMKQDHYAFASELRDLDGPF---------------SSVKVDAGYTDYEHSEIEEGEVHTT 314
               D+ A  S +  L+G F               ++ +  AG   Y     +EG     
Sbjct: 288 ----DYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRELRDEG----- 338

Query: 315 FKNKGYEARIEAR---HQPLGPIEGVIGAQVSRNEF--------------SALGEEAFVP 357
           F ++   A + A+    Q     +   G  V  +++                  +E F P
Sbjct: 339 FNDEALGATLNAQKEWQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAP 398

Query: 358 HTD-------TDSLALFMLEQWQATERLNLSLGARMEHTRVDPDAKGNENFVDADSASSF 410
             +        D+L   +L  W       L+ G R +  ++ P      +     +  S 
Sbjct: 399 AREYRFGVYGQDNL---LLGDW------TLAAGLRFDAQKLSPKNTDRIHGYKVVTMGS- 448

Query: 411 NAFSLSSGAVYQLDPIWSLAANLGYTERAPTFYELYANGAH--VATGAFEV-GDASLNKE 467
           + +S S+   YQ  P W+   +  +  RAP++ + Y    H  V    F +  +  L  E
Sbjct: 449 SEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAE 508

Query: 468 KAISADLALRFDNGTHKGSVGLFYSHFRNYIGLIGTGNTREGEHDHEEEDHDHDHDHEGF 527
            + S +L  ++DNG  +  V +FYS F N+I             D ++  +D   +  G 
Sbjct: 509 TSDSFELGSKYDNGQTQFYVAVFYSIFDNFI-------------DVKQVGYD---NATGS 552

Query: 528 PEYQYQGVR-ARFYGIE------AQDRWQLAENRYGSFALELSGDYTRAKNLDSGEPLPR 580
              QYQ +   + YG E        DRW + EN+ G         Y   K+    + +  
Sbjct: 553 VIQQYQNIAGVKTYGAEMSVMHRLDDRWSV-ENKLG---------YVDGKD-GENQYVRT 601

Query: 581 IAPLRLNSGLVWELDRWQARVDVQHAASQHRKPANETSTDGYTTLGASVGY-RFDIGQS- 638
           + PL  +  L ++ +RW A   +  A++  R P   T     T    + G+  +DIG + 
Sbjct: 602 LTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNY 661

Query: 639 QWLA 642
           QW A
Sbjct: 662 QWNA 665