Pairwise Alignments

Query, 805 a.a., DNA-binding, ATP-dependent protease from Pseudomonas putida KT2440

Subject, 785 a.a., ATP-dependent protease La (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  523 bits (1346), Expect = e-152
 Identities = 301/770 (39%), Positives = 463/770 (60%), Gaps = 21/770 (2%)

Query: 42  VIPIHNRPFFPAQVLPVIVNEEPWAETLDLVAKSPDHCLALFF-----MDTPPEDHRHFD 96
           V+P+ +   +P  V+P+ V  E     L+  A + D  + L       +D P +D   F+
Sbjct: 13  VLPLRDVVVYPHMVIPLFVGREKSIRCLE-TAMAQDKQIILVAQRDAELDEPTKDDI-FE 70

Query: 97  TSALPQYGTLVKVHHASRENGKLQFVAQGLSRVRIRNWLKHHRPPYLVEVEYPRQPAEPT 156
              +     L+K+      +G ++ + +G  R RI  + +     ++ + EY        
Sbjct: 71  VGTVASILQLLKL-----PDGTVKVLVEGGRRARITRYTQE-ADFFVAKAEYLESEPLED 124

Query: 157 DEVKAYGMALINAIKELLPLNPLYSEELKNYLNRFSPNDPSPLTDFAAALTSATGNQLQE 216
            E +    + I   +  + LN     E+   L+    ++ + L D  AA         Q 
Sbjct: 125 KEEEVLVRSAIGQFEGYIKLNKKIPPEVLTSLSGI--DEAARLADTMAAHMPLKLEDKQS 182

Query: 217 VLDCVPMLKRMEKVLPMLRKEVEVARLQNEISAEVNRQIGEHQREFFLKEQLKVIQQELG 276
           VL+   + +R+E ++ M+  E+++ +++  I   V +Q+ + QRE++L EQ+K IQ+ELG
Sbjct: 183 VLEMTNIGERLEYLMAMMESEIDLLQVEKRIRTRVKKQMEKSQREYYLNEQMKAIQKELG 242

Query: 277 LTKDDRSADLEQFEQRLEGKTLPPQARKRIDEEMGKLAILETGSPEYAVTRNYLEWATAL 336
              D+   + E   +++E   +P  A+++   E+ KL ++   S E  V R+Y++W T++
Sbjct: 243 -DLDEGHDEFEVLNRKIEEANMPSDAKEKAVAELNKLRMMSPMSAEATVVRSYVDWMTSV 301

Query: 337 PWGVYGKDKLDLKHARKVLDQYHSGLDDIKERILEFLAVGAWKGEISGSIVLLVGPPGVG 396
           PW    K K DL  A++VLD  H GL+ +K+RILE+LAV +   ++ G I+ LVGPPGVG
Sbjct: 302 PWSQRSKIKRDLAKAQEVLDTDHYGLEKVKDRILEYLAVQSRVRQLKGPILCLVGPPGVG 361

Query: 397 KTSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALKDVEVMNPVIM 456
           KTS+G+SIA++ GR + R ++GG+RDEAEI+GHRRTYIG+ PGK++Q +  V V NP+ +
Sbjct: 362 KTSLGQSIAKATGRKYVRVALGGVRDEAEIRGHRRTYIGSMPGKVIQKMAKVGVKNPLFL 421

Query: 457 LDEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDLRLDLSKVLFVCTANTLDSIPGP 516
           LDEIDKM    +GDPASALLE LDPEQN  F DHYL++  DLS V+FV T+N++ +IPGP
Sbjct: 422 LDEIDKMSSDMRGDPASALLEVLDPEQNATFNDHYLEVDYDLSDVMFVATSNSM-NIPGP 480

Query: 517 LLDRMEVIRLSGYITEEKMTIAKRHLWPKQLEKAGVSKTSLSISDSALRLVIDGYAREAG 576
           LLDRMEVIRLSGY  +EK+ IAK+HL  KQ+E+ G+  + + + DSA+  +I  Y REAG
Sbjct: 481 LLDRMEVIRLSGYTEDEKLNIAKQHLLTKQIERNGLKASEIKVDDSAIVGIIRYYTREAG 540

Query: 577 VRQLEKQLGKLVRKAVVKLLENPDAK-LKIGTKDLETALGIPVFRSEQVLAGK--GVITG 633
           VR LE++L K+ RK V  +L +   K + +  ++L++ LG+  F   +  +    G +TG
Sbjct: 541 VRSLERELSKICRKVVKMILLDKSVKSVTVTAENLKSFLGVQRFDYGKAESNNQIGQVTG 600

Query: 634 LAWTSMGGATLPIEATRIHTHNRGFKLTGKLGDVMKESAEIAYSYISSNLKQFGGDPGFF 693
           LAWT +GG  L IEAT +    +    TG LGDVM+ES + A + + +  +Q G +  F+
Sbjct: 601 LAWTEVGGDLLTIEATSVPGKGK-LTYTGSLGDVMQESIQAAMTVVRARAEQLGINGDFY 659

Query: 694 NEAFIHLHVPEGATPKDGPSAGITMASALLSLARDQSAKKGVAMTGELTLTGQVLPIGGV 753
            +  IH+HVPEGATPKDGPSAG  M +AL+S       +  VAMTGE+TL G+VLPIGG+
Sbjct: 660 EKRDIHVHVPEGATPKDGPSAGAAMCTALVSSLTGNPVRSDVAMTGEITLRGEVLPIGGL 719

Query: 754 REKVIAARRQKIFELILPEPNRGDFEELPDYLREGLTVHFAKRFADVAKV 803
           +EK++AA R  I  +++P+ N  D EE+P  +   L +   +   +V K+
Sbjct: 720 KEKLLAAHRGGIKLVLIPKENERDLEEIPANVIADLEIRPVRWVDEVLKL 769