Pairwise Alignments

Query, 321 a.a., Sigma factor AlgU regulatory protein MucB from Pseudomonas putida KT2440

Subject, 313 a.a., Negative regulator of sigma E activity from Pseudomonas stutzeri RCH2

 Score =  320 bits (819), Expect = 4e-92
 Identities = 172/321 (53%), Positives = 221/321 (68%), Gaps = 8/321 (2%)

Query: 1   MRALPLLSLLIGSCMTVPALAANSSPEASEWLNKLAQAEQKQSYQGSFVYERNGSFSSHD 60
           MR LPL  ++IG  +++PALAA    +A  W+ +LA AEQKQSY G+FVYERNGSFSSH 
Sbjct: 1   MRVLPLY-VVIGGWLSMPALAA----DAESWMGRLAMAEQKQSYAGTFVYERNGSFSSHA 55

Query: 61  IWHRVDDGKVSERLLQLDGAAQEIVRVDGKVECVSGALASGVTAPPDTAPRVLDPLKLMG 120
           +W +V+ G+V ERLLQLDGA  E+V VDG+++C +  LA+ V        + LDP  L  
Sbjct: 56  VWQQVEAGRVRERLLQLDGAPAEVVLVDGQMQCATDELAAQVREAQAWHGQRLDPKALSE 115

Query: 121 WYDLSVAGKSRVAGRDAVIITLTPRDQHRYAFELHLDRHSGLPLRSLMLNDKGQLLERFQ 180
           WY+    G SRVAGR AV + + PRDQHRY FELHLDR + LPL+SLMLN+KGQLLERFQ
Sbjct: 116 WYEFRQIGDSRVAGRPAVALAVVPRDQHRYGFELHLDRDTALPLKSLMLNEKGQLLERFQ 175

Query: 181 MTRLDTDEIPSDADLRPGAACKPVQHVAAGSNDAVAGWRSDWLPPGFELVNSSVRRDPKH 240
            T   TD      +L   + CK V  ++    +  + WRSDWLP GF+L++++ R  P  
Sbjct: 176 FTHFSTD--IDTQELTASSGCKAVS-ISKREANLSSAWRSDWLPAGFKLLDANQRPSPAS 232

Query: 241 NSSVSSLMYDDGLARFSVFIEQVSDDGGTDMRTQLGPTSAVSRRLNTPKGKVMVTVVGEI 300
           + +VS L Y DGLA+FSVF+E +      D R+Q+GPT AVS+R++T  G VMVTVVGEI
Sbjct: 233 SETVSWLSYGDGLAKFSVFLEPLRGALVEDARSQMGPTVAVSKRISTADGDVMVTVVGEI 292

Query: 301 PLGTAERVALSMRPQDAQARQ 321
           PLGTAERVALSMR    QA++
Sbjct: 293 PLGTAERVALSMRTGAEQAQR 313