Pairwise Alignments

Query, 321 a.a., Sigma factor AlgU regulatory protein MucB from Pseudomonas putida KT2440

Subject, 321 a.a., sigma-E factor regulatory protein RseB from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (253), Expect = 2e-26
 Identities = 84/321 (26%), Positives = 146/321 (45%), Gaps = 19/321 (5%)

Query: 1   MRALPLLSLLIGSCMTVPALAANSSPEASEWLNKLAQAEQKQSYQGSFVYERNGSFSSHD 60
           M+ L + +L +    +  A A   S EA   L ++ +A Q  +Y+ S++  +  S     
Sbjct: 1   MKKLLISALTLFCVNSTTAFAEEESAEAL--LYQMNEASQHLNYELSYILVKKNSIEPLL 58

Query: 61  IWHRVDDGKVSERLLQLDGAAQEIVRVDGKVECVSGA-----LASGVTAPPDTAPRVLDP 115
             H   D +    L+ L G  +E++R   +V  +        + SG    P       D 
Sbjct: 59  YRHARQDDQQLAHLVYLSGPVREVIRRGDEVSYIEPGVEPFTIESGNMVAPTIPMLNTDV 118

Query: 116 LKLMGWYDLSVAGKSRVAGRDAVIITLTPRDQHRYAFELHLDRHSGLPLRSLMLNDKGQL 175
            +L  +YD    G++R AG    ++ + P+D  RY++ + +D  S LPLR+ +L+  G++
Sbjct: 119 AELSRYYDFVKVGRAREAGAACQVLRVVPKDGLRYSYVVWVDEKSHLPLRADLLDRDGEV 178

Query: 176 LERFQMTRLDTDEIPSDADLRPGAACKPVQHVAAGSNDAV--AGWRSDWLPPGFELVNSS 233
           LE+++       E    A++  G     +  V      +V    W+  W+P GF+ +  +
Sbjct: 179 LEQYRTISFSVSE--RLAEIMAGLNKVQLPEVLKLPKGSVQETFWQVTWVPDGFQAMELN 236

Query: 234 VRRDPKHNSSVSSLMYDDGLARFSVFIEQVSDDGGTDMRTQLGPTSAVSRRL--NTPKGK 291
             R       V S MY DGL  FSV++        +D  +  G      RR   +  KG+
Sbjct: 237 RYRMAMTERLVESQMYSDGLFNFSVYV------SASDNYSLKGQLVRQGRRTLHSVVKGE 290

Query: 292 VMVTVVGEIPLGTAERVALSM 312
             ++VVG+IP  TA+R+A S+
Sbjct: 291 NEISVVGDIPPATAQRIAQSV 311