Pairwise Alignments

Query, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

Subject, 223 a.a., sigma-70 family RNA polymerase sigma factor from Synechocystis sp000284455 PCC 6803

 Score = 94.7 bits (234), Expect = 1e-24
 Identities = 65/185 (35%), Positives = 92/185 (49%), Gaps = 6/185 (3%)

Query: 10  LVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDS 69
           L ++  R D  AF+ L+ +YQ  +  ++     D  +  D+AQE +I+ YR +       
Sbjct: 39  LCQQKTRPDSTAFNELLRRYQSHVDKILYHLAPDWQDRADLAQEVWIRVYRNIHRLNEPV 98

Query: 70  AFYTWLYRIAINTAKNYLVSRGRRPP----DSDVSSEDAEFYDGDHGLKDLESPERSLLR 125
            F  WL RIA N   + L  R R       D+    +D E  D D    D  SP+ +L  
Sbjct: 99  KFKGWLSRIATNLFYDELRKRKRVSHPISLDAPRRMDDGEI-DWDIE-SDYPSPDETLST 156

Query: 126 DEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKA 185
            E    +   I+ LPE  RT + LRE DGL+YE+IA +    +GTV+SRI RAR  +   
Sbjct: 157 AEFYECLRSAIKDLPEAFRTTIILREIDGLAYEEIAEITGVSLGTVKSRIARARAKLQTF 216

Query: 186 LQPLL 190
           LQP L
Sbjct: 217 LQPYL 221