Pairwise Alignments

Query, 493 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  375 bits (963), Expect = e-108
 Identities = 201/480 (41%), Positives = 294/480 (61%), Gaps = 10/480 (2%)

Query: 10  QRSLIVTLLVLLACGFLATSLLSYSSSRSAIRDGIINTELPLTSDTVYSEIQKDLIRPVL 69
           ++  I  L VLL   FL TS +SY  +  ++   I +  LPLTSD +YSEIQ+DL+RP+ 
Sbjct: 9   KKKFIWLLSVLLLVAFLVTSGISYKVAHDSLSQQIESNTLPLTSDNIYSEIQQDLLRPIF 68

Query: 70  IASMMAQDTFLRDWVLSGEQHTERMTRYLSEVLGKQDIFTSFFVSDRTLTYYQAKGVLKH 129
           I+S+MAQDTF+RDW L+ EQ  E++ RYL E+  K D  TSFF+S+++  YY + GVLK 
Sbjct: 69  ISSLMAQDTFVRDWTLNHEQEPEKLIRYLKEIQDKYDTVTSFFISEQSRNYYHSSGVLKK 128

Query: 130 VQPGTWRDAWYFRLRELKAP--YEINVDLDMANQDSLTVFINYQVHDYQQRFIGAAGVGL 187
           +Q     DAWYFR+R L     YEIN+D D A++   TVF+NY+V D++ +FIG  GVGL
Sbjct: 129 IQDVEPNDAWYFRVRSLPESEHYEINIDADTADRTKTTVFVNYKVFDFESKFIGVTGVGL 188

Query: 188 SVSSVVKLIDQYQRRYQRAVLFTDAKGKVLLTGSE-GGPHGLQVGQLLKDNPELKAMLAE 246
           +V  V  LI+ YQ+RY R V FTD +G V L G E  G + LQ    L+        LA 
Sbjct: 189 AVEKVKALIELYQKRYNRRVFFTDRQGNVTLHGDEYDGANSLQASTGLEQ-------LAT 241

Query: 247 QWVPGEGSHEYHDSENHSHFLNVRHLPELDWYLLVDKRETGVLDRIRHALYLNLAICTMI 306
           + +    +   +     + +LN R +PE  WYL+V++ +      + +  + NLA+  ++
Sbjct: 242 RILTSPSAAFSYQRNGKTVYLNSRLVPEFKWYLVVEQEDAPQEQELLNTFWGNLALSLVV 301

Query: 307 TLVVLALVHAMVRRHQASTEALATLDSLTGLYNRRSFDLLAAQALREARRDSSPLVALLI 366
           T+ +L + +  + R+Q   E +A+ D LTG  NR+ F+    QAL +A+   + +  LLI
Sbjct: 302 TIGILFISNMTLGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKLSQTSISILLI 361

Query: 367 DLDHFKALNDNHGHLAGDEVLRQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQAIE 426
           D+DHFK +ND++GH  GD VL+   N+L+  L+  DILCRWGGEEF+VLL E +  +A E
Sbjct: 362 DIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPEMDLSRAAE 421

Query: 427 VAEKIRRRTEQLTFSYDNQPLRLTTSIGLSSLQPGDTLHALLTRADRALYRAKQAGRNRV 486
           +AE+ R    Q     +   + +T SIG++  Q  +    L+ RAD ALY+AK+AGRN+V
Sbjct: 422 LAERFRDSISQRELKVNGVHIAITVSIGVAEYQKLEPAEDLIKRADLALYQAKEAGRNQV 481