Pairwise Alignments

Query, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

Subject, 243 a.a., ribosomal large subunit pseudouridine synthase B from Synechococcus elongatus PCC 7942

 Score =  116 bits (291), Expect = 3e-31
 Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 10/233 (4%)

Query: 2   RLDRFLANLPSYNRQNVRLMLAQRRVRVDGQVVSDPLTDVREFSRVELD-EQLLQAGRP- 59
           RL + L+ L   +R+     + Q RV ++G+V         +  R+ LD ++L    RP 
Sbjct: 4   RLQKILSQLGVASRRQAEQWIQQGRVTINGRVAEIGQQADLKRDRIHLDGKRLRPKHRPE 63

Query: 60  ARYLMLYKPTGCVSATHDPQHR-TVLDLLPAALRDDLHIAGRLDFNTTGLMILTNDGQWS 118
           ARYL+L+KP G VS   DPQ R TV+DL+    R  LH  GRLD +++GL++L NDG+ +
Sbjct: 64  ARYLLLHKPVGVVSTCRDPQRRRTVIDLVDPEFRPGLHPVGRLDTDSSGLLLLCNDGELT 123

Query: 119 RRLTQPATKLPKHYLVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDILGPHR----A 174
            +++ P   + K Y V  E       +  +R G +   +D  T PA + IL         
Sbjct: 124 YQISHPRFHIEKTYRVWVEGHPPASVLEHWRSGVW--LDDYQTLPAGVRILHDRAESTLL 181

Query: 175 RLAIVEGRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEI 227
            + + EGR  Q++R+     + V+ L R ++G +RL   L PGEYR LTA E+
Sbjct: 182 EVILHEGRNRQIRRVAEQLGHPVLRLTRVAIGPLRLG-SLQPGEYRSLTAAEV 233