Pairwise Alignments

Query, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

Subject, 441 a.a., putative ribosomal large subunit pseudouridine synthase B from Phaeobacter inhibens DSM 17395

 Score = 87.8 bits (216), Expect = 3e-22
 Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 6/225 (2%)

Query: 2   RLDRFLANLPSYNRQNVRLMLAQRRVRVDGQVVSDP-LTDVREFSRVELDEQLLQAGRPA 60
           R+ + L+     +R+    M+A+ RV V+G+V+  P L  V    R+ +D   +Q   P 
Sbjct: 47  RIAKVLSRAGVASRREAERMIAEGRVAVNGKVIDSPALNVVLGKDRIVVDGNPMQDPEPP 106

Query: 61  RYLMLYKPTGCVSATHDP-QHRTVLDLLPAALRDDLHIAGRLDFNTTGLMILTNDGQWSR 119
           R  M +KP+G V+ T+D    RT+ D LP  +   + + GRLD N+ GL++LTNDG   R
Sbjct: 107 RLWMYHKPSGLVTTTNDELDRRTIFDALPEDMPRVMTV-GRLDLNSEGLLLLTNDGGIKR 165

Query: 120 RLTQPATKLPKHYLVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDILGPHRARLAI- 178
           +L  P+T   + Y V       +      R+G     E        LD      A L I 
Sbjct: 166 QLELPSTGWLRRYRVRINGRPKDTDFEPLRQGLVIEGERFQPMTVALDRQQGANAWLTIG 225

Query: 179 -VEGRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYREL 222
             EG+  +++R        V  L R S G  +L   L PGE  EL
Sbjct: 226 LREGKNREIRRAIEDIGFTVNRLLRLSYGPFQLG-NLKPGEVEEL 269