Pairwise Alignments

Query, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

Subject, 236 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  244 bits (624), Expect = 8e-70
 Identities = 125/229 (54%), Positives = 163/229 (71%), Gaps = 1/229 (0%)

Query: 2   RLDRFLANLPSYNRQNVRLMLAQRRVRVDGQVVSDPLTDVREFSRVELDEQLLQAGRPAR 61
           RLDRF++      R+ VRL+LA+ RV VDGQVV D    + +FS+V LD Q L+  +P  
Sbjct: 7   RLDRFISQHCQIPRKQVRLILAKGRVSVDGQVVRDADCQIDQFSQVMLDGQALRQEQPI- 65

Query: 62  YLMLYKPTGCVSATHDPQHRTVLDLLPAALRDDLHIAGRLDFNTTGLMILTNDGQWSRRL 121
           YLML+KP G VSAT D +H+TV+DLLP      LHI GRLD NT+GL++LTND +WS+R+
Sbjct: 66  YLMLHKPVGVVSATKDDEHKTVMDLLPDYQDKGLHIVGRLDLNTSGLLLLTNDSRWSKRI 125

Query: 122 TQPATKLPKHYLVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDILGPHRARLAIVEG 181
             P  K+ K YLV  +  + + YV  F EGFYFAFE++TTQPAQL+IL PH AR+ + EG
Sbjct: 126 MSPEHKVAKQYLVTLKAPLTQAYVKAFAEGFYFAFENITTQPAQLEILEPHLARVTLHEG 185

Query: 182 RYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEIATV 230
           RYHQ+KRMFG F N+V+ LHR S+G + LD  LA G+YR LT  E+A++
Sbjct: 186 RYHQIKRMFGRFRNQVMALHRLSVGNLILDETLAVGQYRPLTPQEVASI 234