Pairwise Alignments

Query, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

Subject, 250 a.a., RNA-binding protein S4 from Burkholderia phytofirmans PsJN

 Score = 87.4 bits (215), Expect = 2e-22
 Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 23/248 (9%)

Query: 1   MRLDRFLANLPSYNRQNVRLMLAQRRVRVDGQVVSDPLTDVREFSRVELDEQLLQAGRPA 60
           +RL + ++ L   +R+     + +  V VDG+ +    T VR   R+E+D     A    
Sbjct: 2   LRLSKLMSELGMCSRREADEWIEKGWVMVDGERIDTLGTKVRPDQRIEIDPAAEAAQMSQ 61

Query: 61  RYLMLYKPTGCVSATHDPQHRTVLDLLPAALRDD---------------LHIAGRLDFNT 105
             ++++KP G VS   +  ++  + L+    R +               L  AGRLD ++
Sbjct: 62  VTVLIHKPVGLVSGQAEDGYQPAITLVTPENRWEGDHADIRFSVAHLRQLAPAGRLDIDS 121

Query: 106 TGLMILTNDGQWSRRLTQPATKLPKHYLV-----DTEDEIGEHYVAKFREGFY--FAFED 158
           TGL++LT DG+ +++L    +++ K YLV     +   ++  H+  +  E      + +D
Sbjct: 122 TGLLVLTQDGRIAKQLIGGHSEIDKEYLVRVAFGEHTTDVESHFPPESLELLCHGLSLDD 181

Query: 159 LTTQPAQLDILGPHRARLAIVEGRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGE 218
           +  +PAQ++     + R  + EG+  Q++RM      +VIGL R  MG + L   L PG+
Sbjct: 182 VPLKPAQVNWQNGEQLRFVLREGKKRQIRRMCELVGLEVIGLKRVRMGRVMLG-ALPPGQ 240

Query: 219 YRELTANE 226
           +R L+ +E
Sbjct: 241 WRYLSPDE 248